Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY04557 | Canola | nucleus | 98.68 | 97.96 |
Bra011955.1-P | Field mustard | nucleus | 98.53 | 95.04 |
AT2G28350.1 | Thale cress | nucleus | 89.85 | 88.17 |
HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 10.59 | 64.29 |
VIT_06s0004g02750.t01 | Wine grape | nucleus | 66.32 | 63.43 |
GSMUA_Achr8P18930_001 | Banana | nucleus | 50.88 | 60.38 |
KRH22880 | Soybean | nucleus | 59.41 | 60.3 |
GSMUA_Achr4P18240_001 | Banana | nucleus | 53.38 | 59.8 |
GSMUA_Achr11P... | Banana | nucleus | 52.79 | 59.44 |
GSMUA_Achr11P... | Banana | nucleus | 47.06 | 59.15 |
KRH26435 | Soybean | nucleus | 60.59 | 58.86 |
Solyc11g069500.1.1 | Tomato | nucleus | 60.29 | 58.66 |
PGSC0003DMT400020874 | Potato | nucleus | 60.15 | 58.51 |
KRH29907 | Soybean | nucleus | 59.85 | 58.39 |
KRH25023 | Soybean | nucleus | 60.0 | 58.2 |
GSMUA_Achr5P18540_001 | Banana | nucleus | 44.26 | 58.0 |
HORVU3Hr1G081710.1 | Barley | cytosol | 8.82 | 57.14 |
GSMUA_Achr5P14630_001 | Banana | nucleus | 46.18 | 56.99 |
CDY43553 | Canola | nucleus | 50.88 | 56.63 |
GSMUA_Achr5P03960_001 | Banana | nucleus | 46.32 | 56.35 |
HORVU5Hr1G024100.1 | Barley | cytosol | 12.5 | 56.29 |
CDX68620 | Canola | nucleus | 51.03 | 56.24 |
Zm00001d014013_P002 | Maize | nucleus | 53.24 | 56.21 |
Os06t0685700-01 | Rice | nucleus | 57.79 | 56.14 |
TraesCS7B01G346700.1 | Wheat | nucleus | 56.91 | 55.76 |
TraesCS7D01G436800.1 | Wheat | nucleus | 56.91 | 55.68 |
EER88840 | Sorghum | nucleus | 57.65 | 55.29 |
EER94066 | Sorghum | nucleus | 55.88 | 55.15 |
TraesCS7A01G446900.1 | Wheat | nucleus | 56.62 | 54.92 |
Os04t0519700-01 | Rice | nucleus | 31.62 | 54.85 |
HORVU7Hr1G101270.1 | Barley | nucleus | 56.03 | 54.66 |
TraesCS1D01G155100.1 | Wheat | nucleus | 54.85 | 54.22 |
TraesCS1A01G156600.1 | Wheat | nucleus | 54.85 | 54.22 |
TraesCS1B01G173700.1 | Wheat | nucleus | 55.0 | 54.12 |
Zm00001d032683_P001 | Maize | nucleus | 54.12 | 54.04 |
Os10t0479900-01 | Rice | nucleus | 55.29 | 53.87 |
Solyc06g075150.2.1 | Tomato | nucleus | 53.09 | 53.8 |
HORVU1Hr1G041770.1 | Barley | nucleus | 54.26 | 53.63 |
PGSC0003DMT400062489 | Potato | nucleus | 53.09 | 53.4 |
Zm00001d014507_P002 | Maize | nucleus | 56.18 | 52.69 |
Zm00001d000358_P001 | Maize | nucleus | 53.97 | 52.43 |
Os02t0628600-01 | Rice | nucleus | 52.21 | 52.13 |
EES05458 | Sorghum | nucleus | 53.53 | 51.41 |
Zm00001d017284_P001 | Maize | nucleus | 51.91 | 49.93 |
TraesCS6A01G222300.1 | Wheat | nucleus | 49.12 | 49.7 |
Zm00001d051172_P001 | Maize | nucleus | 51.47 | 49.23 |
TraesCS2D01G376600.1 | Wheat | nucleus | 51.18 | 48.74 |
TraesCS2B01G397300.1 | Wheat | nucleus | 50.15 | 48.16 |
HORVU2Hr1G089670.1 | Barley | nucleus | 49.71 | 47.61 |
TraesCS6B01G258800.1 | Wheat | mitochondrion | 50.74 | 46.18 |
HORVU6Hr1G058890.2 | Barley | mitochondrion | 50.15 | 44.93 |
TraesCS6D01G212700.1 | Wheat | plastid | 50.29 | 44.47 |
KXG36152 | Sorghum | nucleus | 41.91 | 42.99 |
TraesCS2A01G380300.1 | Wheat | nucleus | 25.0 | 42.08 |
CDY46728 | Canola | nucleus | 51.76 | 41.71 |
KXG26729 | Sorghum | nucleus, plastid | 43.53 | 41.0 |
CDY30172 | Canola | nucleus | 49.12 | 40.24 |
Zm00001d025871_P001 | Maize | nucleus | 34.12 | 39.46 |
CDX79239 | Canola | nucleus | 30.88 | 38.6 |
CDX68039 | Canola | nucleus | 30.88 | 38.53 |
CDX88392 | Canola | nucleus | 29.56 | 37.92 |
HORVU7Hr1G021880.1 | Barley | nucleus | 11.47 | 35.29 |
CDX81024 | Canola | cytosol | 3.53 | 34.78 |
CDX83839 | Canola | mitochondrion | 4.71 | 30.48 |
CDY17209 | Canola | nucleus | 25.0 | 28.24 |
CDY37679 | Canola | nucleus | 24.56 | 28.11 |
CDY27929 | Canola | nucleus | 24.71 | 27.63 |
HORVU2Hr1G089660.8 | Barley | nucleus | 12.5 | 26.15 |
Protein Annotations
MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078FS55 | UniProt:A0A078FS55 |
InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY15734 | ProteinID:CDY15734 | ProteinID:CDY15734.1 | ncoils:Coil |
InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00089963001 | InterPro:IPR000270 |
InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 |
PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF27 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EE943F |
SEG:seg | : | : | : | : | : |
Description
BnaC04g15900DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078FS55]
Coordinates
chrLK032057:+:5267..8101
Molecular Weight (calculated)
75555.7 Da
IEP (calculated)
7.172
GRAVY (calculated)
-0.405
Length
680 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQERSLDPQ LWQACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA SVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS
101: PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR
201: SETGELCVGI RRAKRGGFLR DDEITTSKLM MMKRNGGNVN DANAPGGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF CVKASDVRSA MRIRWCSGMR
301: FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPRKKL RIPQPFDFPF DGTKFPMFSP
401: GFAAGNNGGG ESMCYLSNDN NNNAPAGIQG ARQAQQLFGS PSPSLLSDLN LNTFHSGSKL QQSSSSPAMF LSGFNPRHHY DNIVLPRQTR DAEFNNNISC
501: SLTIGNPGLA QDKKKSDSVK THQFLLFGQP ILTEQQVMNR KRALEEEAEE EEKGGLTWNY GLQGLETGHC KVFMESEDVG RTLDLSVIGS YQELYRKLAE
601: MFGIEERSDL LTHVVYRDAN GVTKRIGDEP FSDFMRATKR LTIKMDISGD NVRKTWITGI RNGENGIDSS TKTGQLSIFA
101: PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR
201: SETGELCVGI RRAKRGGFLR DDEITTSKLM MMKRNGGNVN DANAPGGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF CVKASDVRSA MRIRWCSGMR
301: FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPRKKL RIPQPFDFPF DGTKFPMFSP
401: GFAAGNNGGG ESMCYLSNDN NNNAPAGIQG ARQAQQLFGS PSPSLLSDLN LNTFHSGSKL QQSSSSPAMF LSGFNPRHHY DNIVLPRQTR DAEFNNNISC
501: SLTIGNPGLA QDKKKSDSVK THQFLLFGQP ILTEQQVMNR KRALEEEAEE EEKGGLTWNY GLQGLETGHC KVFMESEDVG RTLDLSVIGS YQELYRKLAE
601: MFGIEERSDL LTHVVYRDAN GVTKRIGDEP FSDFMRATKR LTIKMDISGD NVRKTWITGI RNGENGIDSS TKTGQLSIFA
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
Arabidopsis Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.