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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G28350.1 CDY53305 AT1G15580.1 21734647
AT2G28350.1 CDX83741 AT1G19850.1 22096563
AT2G28350.1 CDY01393 AT1G19850.1 22096563
AT2G28350.1 CDY29392 AT1G19850.1 22096563
AT2G28350.1 CDY39348 AT1G19850.1 22096563
AT2G28350.1 CDY61164 AT1G19850.1 22096563
AT2G28350.1 CDY62586 AT1G19850.1 22096563
AT2G28350.1 CDX94484 AT1G34310.1 22096563
AT2G28350.1 CDX94528 AT1G34310.1 22096563
AT2G28350.1 CDX94748 AT1G34310.1 22096563
AT2G28350.1 CDX94777 AT1G34310.1 22096563
AT2G28350.1 CDY21993 AT1G34310.1 22096563
AT2G28350.1 CDY24162 AT1G34310.1 22096563
AT2G28350.1 CDY24168 AT1G34310.1 22096563
AT2G28350.1 CDY36940 AT1G34310.1 22096563
AT2G28350.1 CDY41720 AT1G34310.1 22096563
AT2G28350.1 CDY48583 AT1G34310.1 22096563
AT2G28350.1 CDY49005 AT1G34310.1 22096563
AT2G28350.1 CDY53570 AT1G34310.1 22096563
AT2G28350.1 CDY54111 AT1G34310.1 22096563
AT2G28350.1 CDY55738 AT1G34310.1 22096563
AT2G28350.1 CDY67714 AT1G34310.1 22096563
AT2G28350.1 CDY69758 AT1G34310.1 22096563
AT2G28350.1 CDY04557 AT2G28350.1 22096563
AT2G28350.1 CDY15734 AT2G28350.1 22096563
AT2G28350.1 CDX75884 AT3G16500.1 21734647
AT2G28350.1 CDX82399 AT3G16500.1 21734647
AT2G28350.1 CDX92077 AT3G16500.1 21734647
AT2G28350.1 CDY34957 AT3G16500.1 21734647
AT2G28350.1 CDY43104 AT3G16500.1 21734647
AT2G28350.1 CDY64626 AT3G16500.1 21734647
AT2G28350.1 CDX80545 AT5G25890.1 22096563
AT2G28350.1 CDX87072 AT5G25890.1 22096563
AT2G28350.1 CDX88204 AT5G25890.1 22096563
AT2G28350.1 CDY19790 AT5G25890.1 22096563
AT2G28350.1 CDX80168 AT5G60450.1 22096563
AT2G28350.1 CDY31545 AT5G60450.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04557 Canola nucleus 98.68 97.96
Bra011955.1-P Field mustard nucleus 98.53 95.04
AT2G28350.1 Thale cress nucleus 89.85 88.17
HORVU4Hr1G078490.1 Barley cytosol, nucleus, plastid 10.59 64.29
VIT_06s0004g02750.t01 Wine grape nucleus 66.32 63.43
GSMUA_Achr8P18930_001 Banana nucleus 50.88 60.38
KRH22880 Soybean nucleus 59.41 60.3
GSMUA_Achr4P18240_001 Banana nucleus 53.38 59.8
GSMUA_Achr11P... Banana nucleus 52.79 59.44
GSMUA_Achr11P... Banana nucleus 47.06 59.15
KRH26435 Soybean nucleus 60.59 58.86
Solyc11g069500.1.1 Tomato nucleus 60.29 58.66
PGSC0003DMT400020874 Potato nucleus 60.15 58.51
KRH29907 Soybean nucleus 59.85 58.39
KRH25023 Soybean nucleus 60.0 58.2
GSMUA_Achr5P18540_001 Banana nucleus 44.26 58.0
HORVU3Hr1G081710.1 Barley cytosol 8.82 57.14
GSMUA_Achr5P14630_001 Banana nucleus 46.18 56.99
CDY43553 Canola nucleus 50.88 56.63
GSMUA_Achr5P03960_001 Banana nucleus 46.32 56.35
HORVU5Hr1G024100.1 Barley cytosol 12.5 56.29
CDX68620 Canola nucleus 51.03 56.24
Zm00001d014013_P002 Maize nucleus 53.24 56.21
Os06t0685700-01 Rice nucleus 57.79 56.14
TraesCS7B01G346700.1 Wheat nucleus 56.91 55.76
TraesCS7D01G436800.1 Wheat nucleus 56.91 55.68
EER88840 Sorghum nucleus 57.65 55.29
EER94066 Sorghum nucleus 55.88 55.15
TraesCS7A01G446900.1 Wheat nucleus 56.62 54.92
Os04t0519700-01 Rice nucleus 31.62 54.85
HORVU7Hr1G101270.1 Barley nucleus 56.03 54.66
TraesCS1D01G155100.1 Wheat nucleus 54.85 54.22
TraesCS1A01G156600.1 Wheat nucleus 54.85 54.22
TraesCS1B01G173700.1 Wheat nucleus 55.0 54.12
Zm00001d032683_P001 Maize nucleus 54.12 54.04
Os10t0479900-01 Rice nucleus 55.29 53.87
Solyc06g075150.2.1 Tomato nucleus 53.09 53.8
HORVU1Hr1G041770.1 Barley nucleus 54.26 53.63
PGSC0003DMT400062489 Potato nucleus 53.09 53.4
Zm00001d014507_P002 Maize nucleus 56.18 52.69
Zm00001d000358_P001 Maize nucleus 53.97 52.43
Os02t0628600-01 Rice nucleus 52.21 52.13
EES05458 Sorghum nucleus 53.53 51.41
Zm00001d017284_P001 Maize nucleus 51.91 49.93
TraesCS6A01G222300.1 Wheat nucleus 49.12 49.7
Zm00001d051172_P001 Maize nucleus 51.47 49.23
TraesCS2D01G376600.1 Wheat nucleus 51.18 48.74
TraesCS2B01G397300.1 Wheat nucleus 50.15 48.16
HORVU2Hr1G089670.1 Barley nucleus 49.71 47.61
TraesCS6B01G258800.1 Wheat mitochondrion 50.74 46.18
HORVU6Hr1G058890.2 Barley mitochondrion 50.15 44.93
TraesCS6D01G212700.1 Wheat plastid 50.29 44.47
KXG36152 Sorghum nucleus 41.91 42.99
TraesCS2A01G380300.1 Wheat nucleus 25.0 42.08
CDY46728 Canola nucleus 51.76 41.71
KXG26729 Sorghum nucleus, plastid 43.53 41.0
CDY30172 Canola nucleus 49.12 40.24
Zm00001d025871_P001 Maize nucleus 34.12 39.46
CDX79239 Canola nucleus 30.88 38.6
CDX68039 Canola nucleus 30.88 38.53
CDX88392 Canola nucleus 29.56 37.92
HORVU7Hr1G021880.1 Barley nucleus 11.47 35.29
CDX81024 Canola cytosol 3.53 34.78
CDX83839 Canola mitochondrion 4.71 30.48
CDY17209 Canola nucleus 25.0 28.24
CDY37679 Canola nucleus 24.56 28.11
CDY27929 Canola nucleus 24.71 27.63
HORVU2Hr1G089660.8 Barley nucleus 12.5 26.15
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90GO:A0A078FS55UniProt:A0A078FS55
InterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlants:CDY15734ProteinID:CDY15734ProteinID:CDY15734.1ncoils:Coil
InterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00089963001InterPro:IPR000270
InterPro:IPR003340InterPro:IPR015300InterPro:PB1_domPFAM:PF02362PFAM:PF06507PFscan:PS50863
PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF27SMART:SM01019SUPFAM:SSF101936UniParc:UPI0004EE943F
SEG:seg:::::
Description
BnaC04g15900DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078FS55]
Coordinates
chrLK032057:+:5267..8101
Molecular Weight (calculated)
75555.7 Da
IEP (calculated)
7.172
GRAVY (calculated)
-0.405
Length
680 amino acids
Sequence
(BLAST)
001: MEQERSLDPQ LWQACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA SVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS
101: PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR
201: SETGELCVGI RRAKRGGFLR DDEITTSKLM MMKRNGGNVN DANAPGGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF CVKASDVRSA MRIRWCSGMR
301: FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPRKKL RIPQPFDFPF DGTKFPMFSP
401: GFAAGNNGGG ESMCYLSNDN NNNAPAGIQG ARQAQQLFGS PSPSLLSDLN LNTFHSGSKL QQSSSSPAMF LSGFNPRHHY DNIVLPRQTR DAEFNNNISC
501: SLTIGNPGLA QDKKKSDSVK THQFLLFGQP ILTEQQVMNR KRALEEEAEE EEKGGLTWNY GLQGLETGHC KVFMESEDVG RTLDLSVIGS YQELYRKLAE
601: MFGIEERSDL LTHVVYRDAN GVTKRIGDEP FSDFMRATKR LTIKMDISGD NVRKTWITGI RNGENGIDSS TKTGQLSIFA
Best Arabidopsis Sequence Match ( AT2G28350.1 )
(BLAST)
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
Arabidopsis Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.