Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49005 | Canola | nucleus | 70.54 | 46.86 |
| CDX94777 | Canola | nucleus | 69.19 | 45.96 |
| CDY54111 | Canola | nucleus | 69.73 | 45.5 |
| CDY24168 | Canola | nucleus | 68.11 | 44.76 |
| CDY36940 | Canola | nucleus | 66.76 | 44.58 |
| CDY53570 | Canola | nucleus | 60.27 | 44.51 |
| CDY41720 | Canola | nucleus | 64.86 | 43.64 |
| CDY67714 | Canola | nucleus | 58.65 | 40.87 |
| CDY21993 | Canola | nucleus | 57.84 | 39.27 |
| CDY48583 | Canola | nucleus | 57.3 | 38.76 |
| CDY55738 | Canola | nucleus | 56.49 | 38.7 |
| CDY69758 | Canola | nucleus | 38.92 | 34.62 |
| CDX94484 | Canola | nucleus | 56.49 | 33.39 |
| AT1G34390.1 | Thale cress | nucleus | 50.54 | 31.27 |
| AT1G35240.1 | Thale cress | nucleus | 48.92 | 30.57 |
| AT1G34310.1 | Thale cress | nucleus | 48.92 | 30.52 |
| AT1G35540.1 | Thale cress | nucleus | 49.73 | 30.41 |
| AT1G34410.1 | Thale cress | nucleus | 49.19 | 30.03 |
| AT1G35520.1 | Thale cress | nucleus | 48.11 | 30.02 |
| CDX94528 | Canola | nucleus | 53.24 | 29.45 |
| AT1G34170.3 | Thale cress | nucleus | 42.7 | 28.94 |
| CDY24162 | Canola | nucleus | 49.46 | 28.15 |
| CDX95705 | Canola | nucleus | 38.92 | 26.42 |
| CDY03502 | Canola | nucleus | 42.7 | 26.33 |
| CDY47607 | Canola | nucleus | 42.43 | 25.99 |
| CDY10978 | Canola | nucleus | 41.89 | 24.8 |
| CDX80025 | Canola | nucleus | 38.92 | 24.66 |
| CDY50434 | Canola | nucleus | 41.62 | 24.64 |
| CDY27291 | Canola | nucleus | 39.46 | 23.59 |
| VIT_02s0025g01740.t01 | Wine grape | nucleus | 42.97 | 23.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.46 | 22.99 |
| PGSC0003DMT400031965 | Potato | nucleus | 40.54 | 22.9 |
| KRH00001 | Soybean | nucleus | 41.08 | 22.89 |
| KRH49135 | Soybean | nucleus | 40.81 | 22.74 |
| KRH75716 | Soybean | nucleus | 42.16 | 22.54 |
| Solyc08g008380.2.1 | Tomato | nucleus | 41.35 | 22.4 |
| KRH65922 | Soybean | nucleus | 41.62 | 22.29 |
| CDY33603 | Canola | nucleus | 39.19 | 21.94 |
| CDY65065 | Canola | nucleus | 38.92 | 21.79 |
| Solyc08g082630.2.1 | Tomato | nucleus | 37.57 | 21.58 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 38.92 | 21.56 |
| GSMUA_Achr10P... | Banana | nucleus | 38.38 | 21.29 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 38.11 | 21.17 |
| Os01t0236300-01 | Rice | nucleus | 37.3 | 19.74 |
| EES02172 | Sorghum | nucleus | 36.49 | 19.62 |
| Zm00001d039267_P005 | Maize | nucleus | 34.32 | 18.35 |
| TraesCS3B01G190100.1 | Wheat | nucleus | 37.03 | 18.07 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 37.03 | 18.07 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 37.03 | 18.05 |
| CDX87230 | Canola | nucleus | 40.27 | 18.0 |
| HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 38.38 | 17.75 |
| CDX86939 | Canola | nucleus | 40.54 | 17.65 |
| CDY00245 | Canola | nucleus | 40.54 | 17.63 |
| CDY67247 | Canola | nucleus | 40.0 | 17.39 |
| CDY16798 | Canola | nucleus | 40.81 | 17.22 |
| CDY31545 | Canola | nucleus | 34.59 | 16.91 |
| CDX80168 | Canola | nucleus | 34.59 | 16.86 |
| CDY39274 | Canola | nucleus | 32.97 | 15.66 |
| CDY07460 | Canola | nucleus | 32.97 | 15.62 |
| CDY53537 | Canola | nucleus | 32.16 | 14.62 |
| CDX74594 | Canola | nucleus | 32.16 | 14.53 |
| CDY62586 | Canola | nucleus | 32.16 | 14.07 |
| CDX83741 | Canola | nucleus | 32.16 | 14.07 |
| CDY61164 | Canola | nucleus | 32.16 | 13.82 |
| CDY01393 | Canola | nucleus | 32.16 | 13.76 |
| CDY29392 | Canola | nucleus | 32.16 | 13.58 |
| CDY39348 | Canola | nucleus | 32.16 | 13.54 |
| CDY12048 | Canola | nucleus | 30.81 | 13.46 |
| CDY09598 | Canola | nucleus | 31.62 | 13.45 |
| CDY02285 | Canola | nucleus | 31.62 | 13.4 |
| CDX90245 | Canola | nucleus | 30.81 | 13.38 |
| CDX96672 | Canola | nucleus | 33.24 | 12.06 |
| CDX83778 | Canola | nucleus | 32.7 | 11.86 |
| CDY26690 | Canola | nucleus | 32.97 | 11.63 |
| CDY41030 | Canola | nucleus | 32.97 | 11.53 |
| CDX92437 | Canola | nucleus | 30.81 | 10.96 |
| CDY16560 | Canola | nucleus | 30.81 | 10.94 |
| CDY45069 | Canola | nucleus | 31.08 | 10.33 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | GO:A0A078E5P1 | InterPro:Auxin_resp | InterPro:B3_DNA-bd |
| EnsemblPlants:CDX94748 | ProteinID:CDX94748 | ProteinID:CDX94748.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00158176001 |
| InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EDE6EB | : | : |
Description
BnaC07g17570D
Coordinates
chrLK031884:+:693942..696241
Molecular Weight (calculated)
43011.8 Da
IEP (calculated)
8.390
GRAVY (calculated)
-0.282
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSNITCNA CFVRIFGFEF VFQLIKNIIC NYILSTDESN NYMYCQLCKL CAGPLFDPPK VGEEIYYFPQ GHIEHAIFYF QTYYILSLIY MDDELCQLKP
101: NFDIPSKIRC NVFSIKLKLY LLTVNETTTD EIYAEISLLP DISEVEIPTP KPENNIQNIN YFTKVLSASD TSKKGSFVLN KRHAIECLPL LDTSKLTPSQ
201: EVIAKDMHGH EWKFKHTLRG TPQRHLFTSG WNDFSKRKDL DVGDSFVFLR GENGESRVGI RKAAIHQQHN KPSSLISKQS MHHGIVATPL NAVKRKCMFV
301: VFYKPRSSQF LVNFDKFIDG VNKKFSIGSR FLMKFEGRDF NEIRYYGTIV RVRDFSTHWK DSEWRSLEVQ
101: NFDIPSKIRC NVFSIKLKLY LLTVNETTTD EIYAEISLLP DISEVEIPTP KPENNIQNIN YFTKVLSASD TSKKGSFVLN KRHAIECLPL LDTSKLTPSQ
201: EVIAKDMHGH EWKFKHTLRG TPQRHLFTSG WNDFSKRKDL DVGDSFVFLR GENGESRVGI RKAAIHQQHN KPSSLISKQS MHHGIVATPL NAVKRKCMFV
301: VFYKPRSSQF LVNFDKFIDG VNKKFSIGSR FLMKFEGRDF NEIRYYGTIV RVRDFSTHWK DSEWRSLEVQ
001: MESGNVVNAQ PELSGIIDGS KSYVYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVETS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR
Arabidopsis Description
ARF12Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.