Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87230 | Canola | nucleus | 90.54 | 95.89 |
| Bra035910.1-P | Field mustard | nucleus | 95.9 | 94.71 |
| AT5G62000.1 | Thale cress | nucleus | 82.21 | 83.93 |
| CDX86939 | Canola | nucleus | 81.19 | 83.76 |
| CDY67247 | Canola | nucleus | 80.96 | 83.43 |
| CDY00245 | Canola | nucleus | 80.84 | 83.31 |
| Os11t0523800-01 | Rice | nucleus | 30.33 | 72.68 |
| VIT_17s0000g00320.t01 | Wine grape | nucleus | 63.63 | 64.73 |
| PGSC0003DMT400037454 | Potato | nucleus | 59.29 | 62.73 |
| Solyc12g042070.1.1 | Tomato | nucleus | 59.18 | 62.68 |
| KRH41062 | Soybean | nucleus | 60.09 | 61.93 |
| KRH63855 | Soybean | nucleus | 59.41 | 61.8 |
| KRH54110 | Soybean | nucleus | 59.29 | 61.68 |
| KRH59742 | Soybean | nucleus | 59.98 | 61.31 |
| PGSC0003DMT400036765 | Potato | nucleus | 58.27 | 60.47 |
| Solyc03g118290.2.1 | Tomato | nucleus | 58.27 | 60.4 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 53.93 | 57.4 |
| GSMUA_Achr10P... | Banana | nucleus | 52.11 | 55.46 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 49.03 | 53.95 |
| TraesCS3D01G434700.1 | Wheat | nucleus | 48.92 | 53.89 |
| TraesCS3B01G475800.1 | Wheat | nucleus | 48.57 | 53.52 |
| CDY27291 | Canola | nucleus | 37.74 | 53.47 |
| Zm00001d011953_P002 | Maize | nucleus | 48.57 | 52.85 |
| KXG34038 | Sorghum | nucleus | 48.8 | 52.84 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 52.57 | 52.81 |
| Os01t0927600-01 | Rice | nucleus | 48.46 | 52.6 |
| CDX80025 | Canola | nucleus | 34.78 | 52.23 |
| CDY47607 | Canola | nucleus | 35.92 | 52.15 |
| OQU83539 | Sorghum | nucleus | 48.23 | 51.9 |
| Zm00001d042267_P003 | Maize | nucleus | 48.23 | 51.71 |
| CDX95705 | Canola | nucleus | 31.81 | 51.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.43 | 51.02 |
| CDY10978 | Canola | nucleus | 36.15 | 50.72 |
| CDY33603 | Canola | nucleus | 38.08 | 50.53 |
| CDY65065 | Canola | nucleus | 38.08 | 50.53 |
| TraesCS3B01G486000.2 | Wheat | nucleus | 47.55 | 50.48 |
| Os12t0479400-02 | Rice | nucleus | 48.35 | 50.42 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 47.55 | 50.3 |
| CDY50434 | Canola | nucleus | 35.69 | 50.08 |
| CDY03502 | Canola | nucleus | 33.64 | 49.17 |
| HORVU3Hr1G097200.10 | Barley | nucleus | 47.32 | 49.11 |
| HORVU3Hr1G096410.4 | Barley | nucleus, plastid | 44.24 | 48.26 |
| Zm00001d049295_P001 | Maize | nucleus | 47.66 | 47.72 |
| EES17013 | Sorghum | nucleus | 45.61 | 47.68 |
| Zm00001d023659_P007 | Maize | nucleus | 44.47 | 47.22 |
| TraesCS3D01G442000.7 | Wheat | nucleus | 47.55 | 47.07 |
| HORVU3Hr1G096510.3 | Barley | plastid | 44.58 | 46.88 |
| Zm00001d041056_P019 | Maize | nucleus | 44.58 | 46.33 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 17.22 | 40.81 |
| CDY67714 | Canola | nucleus | 24.63 | 40.68 |
| CDY69758 | Canola | nucleus | 19.04 | 40.14 |
| CDY48583 | Canola | nucleus | 24.86 | 39.85 |
| CDY21993 | Canola | nucleus | 24.74 | 39.82 |
| CDY53570 | Canola | nucleus | 22.35 | 39.12 |
| CDY41720 | Canola | nucleus | 24.29 | 38.73 |
| CDX94777 | Canola | nucleus | 24.4 | 38.42 |
| CDY49005 | Canola | nucleus | 24.4 | 38.42 |
| CDY36940 | Canola | nucleus | 23.83 | 37.73 |
| CDY54111 | Canola | nucleus | 23.72 | 36.68 |
| CDY55738 | Canola | nucleus | 22.58 | 36.67 |
| CDY24168 | Canola | nucleus | 23.38 | 36.41 |
| CDY31545 | Canola | nucleus | 30.56 | 35.4 |
| CDX80168 | Canola | nucleus | 30.1 | 34.78 |
| CDY39274 | Canola | nucleus | 29.3 | 32.99 |
| CDY07460 | Canola | nucleus | 29.3 | 32.91 |
| CDY12048 | Canola | nucleus | 31.24 | 32.35 |
| CDX90245 | Canola | nucleus | 31.13 | 32.04 |
| CDY53537 | Canola | nucleus | 29.53 | 31.82 |
| CDX74594 | Canola | nucleus | 29.53 | 31.62 |
| CDY02285 | Canola | nucleus | 31.13 | 31.27 |
| CDY09598 | Canola | nucleus | 30.9 | 31.15 |
| CDX94484 | Canola | nucleus | 21.55 | 30.19 |
| CDX83741 | Canola | nucleus | 27.48 | 28.49 |
| CDY62586 | Canola | nucleus | 27.37 | 28.37 |
| CDY01393 | Canola | nucleus | 27.82 | 28.21 |
| CDY61164 | Canola | nucleus | 27.59 | 28.11 |
| CDY29392 | Canola | nucleus | 27.94 | 27.97 |
| CDY39348 | Canola | nucleus | 27.82 | 27.76 |
| CDX94528 | Canola | nucleus | 21.09 | 27.65 |
| CDX83778 | Canola | nucleus | 29.99 | 25.78 |
| CDX96672 | Canola | nucleus | 29.87 | 25.69 |
| CDY26690 | Canola | nucleus | 30.56 | 25.55 |
| CDY41030 | Canola | nucleus | 30.22 | 25.05 |
| CDX92437 | Canola | nucleus | 29.08 | 24.52 |
| CDY16560 | Canola | nucleus | 28.62 | 24.09 |
| CDY24162 | Canola | nucleus | 17.79 | 24.0 |
| CDY45069 | Canola | nucleus | 29.42 | 23.18 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078FWI1 | UniProt:A0A078FWI1 |
| InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY16798 | ProteinID:CDY16798 | ProteinID:CDY16798.1 |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00094679001 | InterPro:IPR000270 |
| InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF8 | SMART:SM01019 | SUPFAM:SSF101936 |
| SUPFAM:SSF54277 | UniParc:UPI0004EEF86A | SEG:seg | : | : | : |
Description
BnaA09g05840DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078FWI1]
Coordinates
chrLK032067:-:413696..418318
Molecular Weight (calculated)
97553.3 Da
IEP (calculated)
6.577
GRAVY (calculated)
-0.629
Length
877 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTTGNSRCI ASLLAGVQAS VTPDKRAEED EDDTRSCRIS KSRFDSRVSS SLLALLDETD LRCMTSSEAL NVAVSGEGQK GHSSRVVDAE AALYRELWHA
101: CAGPLVTVPR QDDRVFYFPQ GHIEQVEAST NQAAEQQMPL YDLPSKILCR VINVDLKAEV DSDEVYAQIT LLPEAIQDEN VIEKEAPPPP PPRFQVHSFC
201: KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHANEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA
301: MRQQGNVSSS VISSHSMHLG VLATAWHAIS TGTMFSVYYK PRTSPSEFIV PFDQYMESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK
401: SKWRSLKVRW DETSSIPRPD RVSPWKLEPA LAPPALSPVP MPRPKRPRSN IAPSSPDSSM LIREGSAMGN KDPLPASGLS RVLQGQEHPT LRTKHTETVE
501: CDAPESSVVW QSSADDDKVD VVSASASASR RYENWMSSGR HDSAYTDLLS GFGANVDPSP GQQIPFYDHS SQPSVAANKF IGDRDGKFDY FANQWQMMHS
601: GLSLTLHESP KIPAASDTSF QNAGGNWPIR PRAVNYFEEA VQAHAQAQAR EHVTKRPKMV EETAKSRDGN CRLFGIPLVN NVNGTDSTMS PRNNFNDTAG
701: LTQMTSPKVQ DLSEQSKGSK STNDQREQGR PFQANHHPHP KDVHTKTHSS RSCTKVQKQG IALGRSVDLS KFQNYEELIA ELDRMFEFNG ELMAPKKDWL
801: IVYTDDENDM MLVGDDPWQE FCGMVRKISI YTKEEVRKMN PGTLSCRSEE EAVVGEGSDP KDAKSASNPS LSSAGHS
101: CAGPLVTVPR QDDRVFYFPQ GHIEQVEAST NQAAEQQMPL YDLPSKILCR VINVDLKAEV DSDEVYAQIT LLPEAIQDEN VIEKEAPPPP PPRFQVHSFC
201: KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHANEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA
301: MRQQGNVSSS VISSHSMHLG VLATAWHAIS TGTMFSVYYK PRTSPSEFIV PFDQYMESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK
401: SKWRSLKVRW DETSSIPRPD RVSPWKLEPA LAPPALSPVP MPRPKRPRSN IAPSSPDSSM LIREGSAMGN KDPLPASGLS RVLQGQEHPT LRTKHTETVE
501: CDAPESSVVW QSSADDDKVD VVSASASASR RYENWMSSGR HDSAYTDLLS GFGANVDPSP GQQIPFYDHS SQPSVAANKF IGDRDGKFDY FANQWQMMHS
601: GLSLTLHESP KIPAASDTSF QNAGGNWPIR PRAVNYFEEA VQAHAQAQAR EHVTKRPKMV EETAKSRDGN CRLFGIPLVN NVNGTDSTMS PRNNFNDTAG
701: LTQMTSPKVQ DLSEQSKGSK STNDQREQGR PFQANHHPHP KDVHTKTHSS RSCTKVQKQG IALGRSVDLS KFQNYEELIA ELDRMFEFNG ELMAPKKDWL
801: IVYTDDENDM MLVGDDPWQE FCGMVRKISI YTKEEVRKMN PGTLSCRSEE EAVVGEGSDP KDAKSASNPS LSSAGHS
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.