Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69758 | Canola | nucleus | 68.74 | 87.74 |
| CDY21993 | Canola | nucleus | 83.8 | 81.65 |
| CDY48583 | Canola | nucleus | 83.05 | 80.62 |
| CDY53570 | Canola | nucleus | 56.12 | 59.48 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 40.87 | 58.65 |
| CDY41720 | Canola | nucleus | 60.64 | 58.55 |
| CDY24168 | Canola | nucleus | 61.39 | 57.9 |
| CDX94777 | Canola | nucleus | 60.45 | 57.63 |
| CDY49005 | Canola | nucleus | 60.26 | 57.45 |
| CDY36940 | Canola | nucleus | 59.7 | 57.22 |
| CDY54111 | Canola | nucleus | 60.26 | 56.44 |
| CDY55738 | Canola | nucleus | 54.8 | 53.89 |
| AT1G34390.1 | Thale cress | nucleus | 52.73 | 46.82 |
| AT1G35540.1 | Thale cress | nucleus | 52.92 | 46.45 |
| AT1G35240.1 | Thale cress | nucleus | 51.6 | 46.28 |
| AT1G34410.1 | Thale cress | nucleus | 52.54 | 46.04 |
| AT1G34310.1 | Thale cress | nucleus | 51.41 | 46.04 |
| AT1G35520.1 | Thale cress | nucleus | 51.41 | 46.04 |
| AT1G34170.3 | Thale cress | nucleus | 46.33 | 45.05 |
| CDX94484 | Canola | nucleus | 52.73 | 44.73 |
| CDY47607 | Canola | nucleus | 46.14 | 40.56 |
| CDX94528 | Canola | nucleus | 49.72 | 39.46 |
| CDX80025 | Canola | nucleus | 43.13 | 39.21 |
| CDY10978 | Canola | nucleus | 46.14 | 39.2 |
| CDY50434 | Canola | nucleus | 45.95 | 39.04 |
| CDY03502 | Canola | nucleus | 44.07 | 39.0 |
| CDY24162 | Canola | nucleus | 46.7 | 38.15 |
| CDX95705 | Canola | nucleus | 38.98 | 37.98 |
| VIT_02s0025g01740.t01 | Wine grape | nucleus | 47.27 | 36.8 |
| KRH49135 | Soybean | nucleus | 45.01 | 35.99 |
| KRH00001 | Soybean | nucleus | 44.63 | 35.69 |
| PGSC0003DMT400031965 | Potato | nucleus | 42.94 | 34.81 |
| KRH65922 | Soybean | nucleus | 45.2 | 34.73 |
| KRH75716 | Soybean | nucleus | 45.2 | 34.68 |
| CDY27291 | Canola | nucleus | 40.3 | 34.57 |
| GSMUA_Achr10P... | Banana | nucleus | 42.94 | 34.18 |
| Solyc08g082630.2.1 | Tomato | nucleus | 41.24 | 34.01 |
| Solyc08g008380.2.1 | Tomato | nucleus | 43.69 | 33.97 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 42.18 | 33.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.92 | 33.39 |
| CDY33603 | Canola | nucleus | 40.68 | 32.68 |
| CDY65065 | Canola | nucleus | 40.49 | 32.53 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 40.11 | 31.98 |
| Os01t0236300-01 | Rice | nucleus | 38.61 | 29.33 |
| EES02172 | Sorghum | nucleus | 37.29 | 28.78 |
| Zm00001d039267_P005 | Maize | nucleus | 35.78 | 27.46 |
| TraesCS3B01G190100.1 | Wheat | nucleus | 37.66 | 26.39 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 37.66 | 26.39 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 37.66 | 26.35 |
| CDX87230 | Canola | nucleus | 40.49 | 25.97 |
| CDX86939 | Canola | nucleus | 41.24 | 25.76 |
| CDY00245 | Canola | nucleus | 41.05 | 25.62 |
| HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 38.04 | 25.25 |
| CDY67247 | Canola | nucleus | 40.3 | 25.15 |
| CDY16798 | Canola | nucleus | 40.68 | 24.63 |
| CDY39274 | Canola | nucleus | 35.4 | 24.13 |
| CDY07460 | Canola | nucleus | 35.22 | 23.94 |
| CDY31545 | Canola | nucleus | 33.71 | 23.65 |
| CDX80168 | Canola | nucleus | 33.71 | 23.58 |
| CDY53537 | Canola | nucleus | 35.4 | 23.1 |
| CDX74594 | Canola | nucleus | 35.4 | 22.95 |
| CDY12048 | Canola | nucleus | 35.59 | 22.31 |
| CDX90245 | Canola | nucleus | 35.4 | 22.07 |
| CDY62586 | Canola | nucleus | 34.27 | 21.51 |
| CDX83741 | Canola | nucleus | 34.27 | 21.51 |
| CDY09598 | Canola | nucleus | 35.22 | 21.49 |
| CDY02285 | Canola | nucleus | 35.22 | 21.42 |
| CDY61164 | Canola | nucleus | 33.71 | 20.79 |
| CDY01393 | Canola | nucleus | 33.71 | 20.69 |
| CDY29392 | Canola | nucleus | 33.9 | 20.55 |
| CDY39348 | Canola | nucleus | 33.9 | 20.48 |
| CDX83778 | Canola | nucleus | 37.66 | 19.61 |
| CDX96672 | Canola | nucleus | 37.66 | 19.61 |
| CDY26690 | Canola | nucleus | 37.29 | 18.88 |
| CDY41030 | Canola | nucleus | 37.1 | 18.62 |
| CDY16560 | Canola | nucleus | 35.59 | 18.14 |
| CDX92437 | Canola | nucleus | 35.4 | 18.08 |
| CDY45069 | Canola | nucleus | 35.03 | 16.71 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078JLM8 | UniProt:A0A078JLM8 |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY67714 | ProteinID:CDY67714 | ProteinID:CDY67714.1 | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00066057001 | InterPro:IPR000270 | InterPro:IPR003340 |
| InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0004EE71B8 |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng25060DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078JLM8]
Coordinates
chrLK036424:-:1265..4296
Molecular Weight (calculated)
60774.4 Da
IEP (calculated)
7.798
GRAVY (calculated)
-0.460
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MENNKIRNAQ PKFQGTDETN RYMYNQLWKL CAGSLFDLPI IGEEVYYFPQ GHIEQAHLVA SENDNLCQLK PIFDISSKIR CNVISIKLKV DTNTDEVYAK
101: VSLSPCSPVI SIPNGNNEQN INYFTKVLTA SDTSTHGGFS LFKKDAIECL PLLDMSQQAP SQWIVAKDLH DHVWKFKHTF RGTPQRHLFT SGWKQFARKK
201: SLAVGDSVVF LRGENGESRI RIRKAAPQQS NISSSVISEE SMHHGLVATA SNAINTKCMF DVFYRPKSSK FIVNCKKVID AVNMKFNTGS RFTMKFEGHD
301: FNEIIYSGTI VKVEDFSIYW KDSEWRNLQV QWDEAATIPR PNKVSPWEIE PLIRKNKRQR EINEIGLAMS KPDYNDQMAQ STKENSITNA SSSFRLFGVD
401: LTASTKGRDV LEPLESYQKS KISEIFDEEK LDQIQAVTSL TETQTKKIRF TTSSTKVHME GVVRTVDLTD FDGYNHMIVE LEKLFNIEGK LHMHSQWKLT
501: FKVHEGDMML VGDDSWLKFC NTVNEIFICS K
101: VSLSPCSPVI SIPNGNNEQN INYFTKVLTA SDTSTHGGFS LFKKDAIECL PLLDMSQQAP SQWIVAKDLH DHVWKFKHTF RGTPQRHLFT SGWKQFARKK
201: SLAVGDSVVF LRGENGESRI RIRKAAPQQS NISSSVISEE SMHHGLVATA SNAINTKCMF DVFYRPKSSK FIVNCKKVID AVNMKFNTGS RFTMKFEGHD
301: FNEIIYSGTI VKVEDFSIYW KDSEWRNLQV QWDEAATIPR PNKVSPWEIE PLIRKNKRQR EINEIGLAMS KPDYNDQMAQ STKENSITNA SSSFRLFGVD
401: LTASTKGRDV LEPLESYQKS KISEIFDEEK LDQIQAVTSL TETQTKKIRF TTSSTKVHME GVVRTVDLTD FDGYNHMIVE LEKLFNIEGK LHMHSQWKLT
501: FKVHEGDMML VGDDSWLKFC NTVNEIFICS K
001: MESGNIVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKIYYFP QGNIELVEAS TREELNELKP ICDLPSKLQC RVIAIQLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK
201: KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD
301: FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS
401: PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI
501: QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK
201: KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD
301: FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS
401: PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI
501: QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ
Arabidopsis Description
ARF22Auxin response factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.