CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80545
CDX82361
CDX83741
CDX86939
CDX87072
CDX87230
CDX88204
CDX89832
CDX92140
CDX92437
CDX92973
CDX94484
CDX94528
CDX94748
CDX94777
CDX95843
CDY00245
CDY01393
CDY03502
CDY10068
CDY10349
CDY10694
CDY10978
CDY15493
CDY16560
CDY16798
CDY18214
CDY19790
CDY21111
CDY21993
CDY24162
CDY24168
CDY27291
CDY27511
CDY29392
CDY30017
CDY30781
CDY32537
CDY33603
CDY36940
CDY39348
CDY41720
CDY41894
CDY45069
CDY46058
CDY46895
CDY47607
CDY48005
CDY48583
CDY49005
CDY50434
CDY50750
CDY53305
CDY53570
CDY54111
CDY55738
CDY61164
CDY62586
CDY63072
CDY63910
CDY65065
CDY67247
CDY67714
CDY69758
CDY71609

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34310.1	CDX83741	AT1G19850.1	22096563
AT1G34310.1	CDY01393	AT1G19850.1	22096563
AT1G34310.1	CDY29392	AT1G19850.1	22096563
AT1G34310.1	CDY39348	AT1G19850.1	22096563
AT1G34310.1	CDY61164	AT1G19850.1	22096563
AT1G34310.1	CDY62586	AT1G19850.1	22096563
AT1G34310.1	CDX94484	AT1G34310.1	22096563
AT1G34310.1	CDX94528	AT1G34310.1	22096563
AT1G34310.1	CDX94748	AT1G34310.1	22096563
AT1G34310.1	CDX94777	AT1G34310.1	22096563
AT1G34310.1	CDY21993	AT1G34310.1	22096563
AT1G34310.1	CDY24162	AT1G34310.1	22096563
AT1G34310.1	CDY24168	AT1G34310.1	22096563
AT1G34310.1	CDY36940	AT1G34310.1	22096563
AT1G34310.1	CDY41720	AT1G34310.1	22096563
AT1G34310.1	CDY48583	AT1G34310.1	22096563
AT1G34310.1	CDY49005	AT1G34310.1	22096563
AT1G34310.1	CDY53570	AT1G34310.1	22096563
AT1G34310.1	CDY54111	AT1G34310.1	22096563
AT1G34310.1	CDY55738	AT1G34310.1	22096563
AT1G34310.1	CDY67714	AT1G34310.1	22096563
AT1G34310.1	CDY69758	AT1G34310.1	22096563
AT1G34310.1	CDY27291	AT1G59750.1	22096563
AT1G34310.1	CDY33603	AT1G59750.1	22096563
AT1G34310.1	CDY65065	AT1G59750.1	22096563
AT1G34310.1	CDX82361	AT3G17600.1	21734647
AT1G34310.1	CDX92140	AT3G17600.1	21734647
AT1G34310.1	CDX95843	AT3G17600.1	21734647
AT1G34310.1	CDY46058	AT3G17600.1	21734647
AT1G34310.1	CDY46895	AT3G17600.1	21734647
AT1G34310.1	CDY71609	AT3G17600.1	21734647
AT1G34310.1	CDY03502	AT4G23980.1	22096563
AT1G34310.1	CDY10978	AT4G23980.1	22096563
AT1G34310.1	CDY47607	AT4G23980.1	22096563
AT1G34310.1	CDY50434	AT4G23980.1	22096563
AT1G34310.1	CDX86939	AT5G62000.1	21734647
AT1G34310.1	CDX87230	AT5G62000.1	21734647
AT1G34310.1	CDY00245	AT5G62000.1	21734647
AT1G34310.1	CDY16798	AT5G62000.1	21734647
AT1G34310.1	CDY67247	AT5G62000.1	21734647
AT1G34390.1	CDX94484	AT1G34310.1	21734647
AT1G34390.1	CDX94528	AT1G34310.1	21734647
AT1G34390.1	CDX94748	AT1G34310.1	21734647
AT1G34390.1	CDX94777	AT1G34310.1	21734647
AT1G34390.1	CDY21993	AT1G34310.1	21734647
AT1G34390.1	CDY24162	AT1G34310.1	21734647
AT1G34390.1	CDY24168	AT1G34310.1	21734647
AT1G34390.1	CDY36940	AT1G34310.1	21734647
AT1G34390.1	CDY41720	AT1G34310.1	21734647
AT1G34390.1	CDY48583	AT1G34310.1	21734647
AT1G34390.1	CDY49005	AT1G34310.1	21734647
AT1G34390.1	CDY53570	AT1G34310.1	21734647
AT1G34390.1	CDY54111	AT1G34310.1	21734647
AT1G34390.1	CDY55738	AT1G34310.1	21734647
AT1G34390.1	CDY67714	AT1G34310.1	21734647
AT1G34390.1	CDY69758	AT1G34310.1	21734647
AT1G34390.1	CDY27511	AT2G46990.1	21734647
AT1G34390.1	CDY48005	AT2G46990.1	21734647
AT1G34390.1	CDY21111	AT3G04730.1	21734647
AT1G34390.1	CDY30017	AT3G04730.1	21734647
AT1G34390.1	CDY41894	AT3G04730.1	21734647
AT1G34390.1	CDY50750	AT3G04730.1	21734647
AT1G34390.1	CDX92973	AT3G23050.1	21734647
AT1G34390.1	CDY10349	AT3G23050.1	21734647
AT1G34390.1	CDY10694	AT3G23050.1	21734647
AT1G34390.1	CDY30781	AT3G23050.1	21734647
AT1G34390.1	CDY63910	AT3G23050.1	21734647
AT1G34390.1	CDX80545	AT5G25890.1	21734647
AT1G34390.1	CDX87072	AT5G25890.1	21734647
AT1G34390.1	CDX88204	AT5G25890.1	21734647
AT1G34390.1	CDY19790	AT5G25890.1	21734647
AT1G35240.1	CDX89832	AT1G04250.1	21734647
AT1G35240.1	CDY10068	AT1G04250.1	21734647
AT1G35240.1	CDY15493	AT1G04250.1	21734647
AT1G35240.1	CDY18214	AT1G04250.1	21734647
AT1G35240.1	CDY32537	AT1G04250.1	21734647
AT1G35240.1	CDY63072	AT1G04250.1	21734647
AT1G35240.1	CDY53305	AT1G15580.1	21734647
AT1G35240.1	CDX92437	AT5G20730.1	21734647
AT1G35240.1	CDY16560	AT5G20730.1	21734647
AT1G35240.1	CDY45069	AT5G20730.1	21734647
AT1G35540.1	CDY53305	AT1G15580.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36940	Canola	nucleus	58.46	68.59
CDY24168	Canola	nucleus	58.15	67.14
CDY49005	Canola	nucleus	51.69	60.32
CDX94777	Canola	nucleus	51.54	60.14
CDY41720	Canola	nucleus	49.69	58.73
CDY55738	Canola	nucleus	48.62	58.52
CDY54111	Canola	nucleus	50.77	58.2
CDY53570	Canola	nucleus	44.15	57.29
CDX94748	Canola	endoplasmic reticulum, vacuole	28.15	49.46
CDX94484	Canola	nucleus	45.85	47.6
CDY67714	Canola	nucleus	38.15	46.7
CDY21993	Canola	nucleus	38.77	46.24
CDY48583	Canola	nucleus	38.77	46.07
CDX94528	Canola	nucleus	45.85	44.54
CDY69758	Canola	nucleus	26.15	40.87
AT1G34390.1	Thale cress	nucleus	32.92	35.79
AT1G34310.1	Thale cress	nucleus	32.62	35.75
AT1G34410.1	Thale cress	nucleus	32.92	35.31
AT1G35240.1	Thale cress	nucleus	32.0	35.14
AT1G35520.1	Thale cress	nucleus	31.54	34.57
AT1G35540.1	Thale cress	nucleus	32.0	34.38
AT1G34170.3	Thale cress	nucleus	28.31	33.7
CDX95705	Canola	nucleus	24.15	28.81
CDY47607	Canola	nucleus	26.0	27.98
CDX80025	Canola	nucleus	24.15	26.88
CDY10978	Canola	nucleus	25.69	26.72
CDY50434	Canola	nucleus	25.54	26.56
CDY03502	Canola	nucleus	24.31	26.33
VIT_02s0025g01740.t01	Wine grape	nucleus	26.62	25.37
KRH00001	Soybean	nucleus	25.69	25.15
KRH49135	Soybean	nucleus	25.54	25.0
KRH75716	Soybean	nucleus	26.15	24.57
KRH65922	Soybean	nucleus	25.85	24.31
PGSC0003DMT400031965	Potato	nucleus	24.46	24.27
GSMUA_AchrUn_...	Banana	nucleus	23.69	24.25
CDY27291	Canola	nucleus	22.92	24.07
GSMUA_Achr10P...	Banana	nucleus	24.0	23.39
Solyc08g008380.2.1	Tomato	nucleus	24.46	23.28
Solyc08g082630.2.1	Tomato	nucleus	22.92	23.14
GSMUA_Achr7P24330_001	Banana	nucleus	23.54	22.97
CDY33603	Canola	nucleus	22.77	22.39
GSMUA_Achr2P19760_001	Banana	nucleus	22.92	22.31
CDY65065	Canola	nucleus	22.62	22.24
Os01t0236300-01	Rice	nucleus	21.38	19.89
EES02172	Sorghum	nucleus	20.62	19.48
CDX86939	Canola	nucleus	24.92	19.06
CDY00245	Canola	nucleus	24.92	19.04
CDX87230	Canola	nucleus	24.0	18.84
TraesCS3B01G190100.1	Wheat	nucleus	21.69	18.6
TraesCS3D01G166700.1	Wheat	nucleus	21.69	18.6
TraesCS3A01G159200.1	Wheat	nucleus	21.69	18.58
Zm00001d039267_P005	Maize	nucleus	19.69	18.5
CDY67247	Canola	nucleus	23.85	18.21
HORVU3Hr1G032230.6	Barley	nucleus, plastid	22.0	17.88
CDY16798	Canola	nucleus	24.0	17.79
CDY07460	Canola	nucleus	20.92	17.41
CDY39274	Canola	nucleus	20.77	17.33
CDY53537	Canola	nucleus	20.0	15.97
CDX74594	Canola	nucleus	20.0	15.87
CDY31545	Canola	nucleus	18.0	15.46
CDX80168	Canola	nucleus	18.0	15.41
CDY12048	Canola	nucleus	19.85	15.23
CDX90245	Canola	nucleus	19.85	15.14
CDY09598	Canola	nucleus	19.69	14.71
CDY02285	Canola	nucleus	19.69	14.66
CDX83741	Canola	nucleus	18.15	13.95
CDY62586	Canola	nucleus	18.0	13.83
CDY61164	Canola	nucleus	18.31	13.82
CDY01393	Canola	nucleus	18.31	13.76
CDY29392	Canola	nucleus	18.0	13.36
CDY39348	Canola	nucleus	17.69	13.08
CDX96672	Canola	nucleus	20.15	12.84
CDX83778	Canola	nucleus	20.0	12.75
CDY26690	Canola	nucleus	20.0	12.39
CDY41030	Canola	nucleus	20.0	12.29
CDX92437	Canola	nucleus	19.38	12.12
CDY16560	Canola	nucleus	19.38	12.09
CDY45069	Canola	nucleus	19.38	11.32

Protein Annotations

Gene3D:2.40.330.10	Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078GG88	UniProt:A0A078GG88	InterPro:Auxin_resp
EnsemblPlants:CDY24162	ProteinID:CDY24162	ProteinID:CDY24162.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00024770001	InterPro:IPR000270	InterPro:IPR015300
InterPro:PB1_dom	PFAM:PF06507	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF1	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0004EDED83	SEG:seg	:	:	:

Description

BnaC03g57150DBnaC03g57150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GG88]

Coordinates

chrLK032154:-:425881..430829

Molecular Weight (calculated)

73469.5 Da

IEP (calculated)

7.466

GRAVY (calculated)

-0.391

Length

650 amino acids

Sequence
(BLAST)

001: MASDLIMHAQ TEFLATDGTN NYLYDQLWKL CAGPLFDPQK IGEELVTSIN DELCQLKPVF NIPSKIRCNV FSIKRKVETT TDEIYAEISL LPDTSVKLNV
101: KIQNIKCFTK VLSASDTSKK GGFVLNKRHA IECLPSLDTS HLTLSQEINA IDIHGHNGES RVGIRKAGHH QRENIPSSVI SKESMHHGVV ATALNAIKSK
201: CMFVVFYKPR SSQFVVNIDK FIDGVNKKFS IGSRFLMKYN GMKLQQFQDL IRDLHRAFNT FIRHSKIRFK YVGSYIDPRP RSWTFKHTIF NELLIPYYHV
301: KPNYNEQMVQ AMKETSTTTA TTSYRLFGVD LKIPAKTKDS IEPINSYKKF KISKIFEEEK VDHIQTRSHT KVRMEGVVER TVNLSIFDGY NQLIDELERL
401: FDIKGKLHMH NQWKIVFINA DGDMILLGDD PWLKFCNTAK EIFICSKNDA KIGDADNKFS EGHQEFERPS SVEVGPLVSS PPTEGVSSPP TEGVSSPWVS
501: LLVSKKVSCD ATITPTRVPP NESQIGVDSS GGNWDSFSAY LGGPFRSISD ENLEEAKEEF RDILFARFHG EAPDIGRNID IFNVIWSRPD KELEETSYEA
601: AIYSDKIAEG GYISSASEAI GVKIGHFEIS GQDYVRSIKE NPLNSKGRKC

Best Arabidopsis Sequence Match ( AT1G34310.1 )
(BLAST)

001: MESGNVVNAQ PELSGIIDGS KSYVYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVETS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSAHGG FFVPKKHAIE CLPSLDMSQP LPAQELLAID LHGNQWRFNH NYRGTPQRHL LTTGWNAFTT
201: SKKLVAGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVVA SAKHAFDNQC MFTVVYKPRS SKFIVSYDKF LDAVNNKFNV GSRFTMRLEG
301: DDFSERRCFG TIIGVSDFSP HWKCSEWRSL EVQWDEFTSF PGPKKVSPWD IEHLMPAINV PRSFLLKNKR LREVNEIGSS SSHLLPPILT QGQENEQLSV
401: ASPMNISLRY RDATEDAMNP SKLLMSYPVQ PMPKLNYNNQ MVTEMEENIT TKTGTNFRLF GVTLDTPPVI KDPIEEIGSE ISKLTEGKKF GLSQTLRSPT
501: EIQNKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWEI AFTDSDEDKM LVGDDPWPEF CNMVKKIFIQ KRR

Arabidopsis Description

ARF12Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.