Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010776.1-P | Field mustard | nucleus | 97.54 | 99.88 |
| CDY12048 | Canola | nucleus | 98.0 | 98.58 |
| KRH58711 | Soybean | nucleus | 41.31 | 89.57 |
| CDY02285 | Canola | nucleus | 91.43 | 89.23 |
| CDY09598 | Canola | nucleus | 88.85 | 87.01 |
| AT1G30330.3 | Thale cress | nucleus | 93.43 | 85.13 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 74.41 | 69.82 |
| KRH21113 | Soybean | nucleus | 73.12 | 69.53 |
| KRH11131 | Soybean | nucleus | 72.77 | 69.04 |
| GSMUA_Achr5P02450_001 | Banana | nucleus | 65.26 | 67.15 |
| KRH42603 | Soybean | nucleus | 70.77 | 66.63 |
| GSMUA_Achr5P26580_001 | Banana | nucleus | 62.44 | 65.92 |
| GSMUA_Achr3P23290_001 | Banana | nucleus | 63.15 | 65.61 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 66.08 | 61.94 |
| TraesCS7B01G363100.1 | Wheat | nucleus | 66.08 | 61.94 |
| TraesCS7D01G449900.2 | Wheat | nucleus | 65.96 | 61.89 |
| GSMUA_Achr11P... | Banana | nucleus | 60.09 | 61.76 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 61.97 | 61.75 |
| GSMUA_Achr11P... | Banana | nucleus | 65.85 | 61.45 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 65.49 | 61.39 |
| EER90218 | Sorghum | nucleus | 65.49 | 60.72 |
| Os02t0164900-01 | Rice | nucleus | 64.67 | 60.68 |
| Zm00001d014377_P002 | Maize | nucleus | 65.26 | 60.63 |
| Os06t0677800-01 | Rice | nucleus | 65.02 | 60.41 |
| HORVU7Hr1G106280.1 | Barley | nucleus | 66.2 | 60.13 |
| EES04575 | Sorghum | nucleus | 64.2 | 60.04 |
| EES17392 | Sorghum | nucleus | 62.91 | 59.89 |
| TraesCS6D01G127600.2 | Wheat | nucleus | 64.91 | 59.65 |
| Zm00001d031064_P003 | Maize | nucleus | 62.79 | 59.64 |
| Zm00001d041497_P005 | Maize | nucleus | 61.97 | 59.46 |
| TraesCS6B01G167100.1 | Wheat | nucleus | 64.55 | 59.33 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 64.44 | 59.16 |
| Zm00001d053819_P002 | Maize | nucleus | 63.26 | 58.65 |
| CDY07460 | Canola | nucleus | 53.64 | 58.51 |
| HORVU6Hr1G026730.9 | Barley | nucleus | 63.73 | 58.45 |
| CDY39274 | Canola | nucleus | 53.17 | 58.15 |
| Os12t0613700-01 | Rice | nucleus | 61.15 | 57.95 |
| HORVU5Hr1G009650.20 | Barley | nucleus | 60.21 | 57.58 |
| TraesCS5B01G039800.1 | Wheat | nucleus | 60.09 | 57.46 |
| CDY53537 | Canola | nucleus | 54.81 | 57.37 |
| Zm00001d036593_P001 | Maize | plastid | 64.32 | 57.08 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 60.21 | 57.06 |
| CDX74594 | Canola | nucleus | 54.81 | 57.02 |
| TraesCS5D01G045700.2 | Wheat | nucleus | 60.09 | 56.89 |
| CDX80025 | Canola | nucleus | 27.46 | 40.07 |
| CDX95705 | Canola | nucleus | 25.12 | 39.27 |
| CDX83741 | Canola | nucleus | 38.38 | 38.65 |
| CDY62586 | Canola | nucleus | 38.38 | 38.65 |
| CDY29392 | Canola | nucleus | 39.08 | 38.01 |
| CDY61164 | Canola | nucleus | 38.38 | 37.98 |
| CDY27291 | Canola | nucleus | 27.58 | 37.96 |
| CDY01393 | Canola | nucleus | 38.38 | 37.8 |
| CDY39348 | Canola | nucleus | 38.62 | 37.43 |
| CDY47607 | Canola | nucleus | 26.29 | 37.09 |
| CDX96672 | Canola | nucleus | 44.25 | 36.96 |
| CDX83778 | Canola | nucleus | 44.01 | 36.76 |
| CDY10978 | Canola | nucleus | 26.88 | 36.64 |
| CDY26690 | Canola | nucleus | 44.95 | 36.51 |
| CDY41030 | Canola | nucleus | 45.07 | 36.29 |
| CDY50434 | Canola | nucleus | 26.53 | 36.16 |
| CDX92437 | Canola | nucleus | 43.54 | 35.67 |
| CDY03502 | Canola | nucleus | 25.12 | 35.67 |
| CDY69758 | Canola | nucleus | 17.37 | 35.58 |
| CDY67714 | Canola | nucleus | 22.07 | 35.4 |
| CDY65065 | Canola | nucleus | 27.46 | 35.4 |
| CDY33603 | Canola | nucleus | 27.35 | 35.25 |
| CDY48583 | Canola | nucleus | 22.54 | 35.1 |
| CDY21993 | Canola | nucleus | 22.42 | 35.05 |
| CDY16560 | Canola | nucleus | 42.84 | 35.03 |
| CDY45069 | Canola | nucleus | 43.78 | 33.51 |
| CDX86939 | Canola | nucleus | 32.98 | 33.06 |
| CDX87230 | Canola | nucleus | 31.81 | 32.73 |
| CDY00245 | Canola | nucleus | 32.63 | 32.67 |
| CDY31545 | Canola | nucleus | 28.87 | 32.5 |
| CDY67247 | Canola | nucleus | 32.39 | 32.43 |
| CDX80168 | Canola | nucleus | 28.64 | 32.15 |
| CDY53570 | Canola | nucleus | 18.9 | 32.14 |
| CDY41720 | Canola | nucleus | 20.66 | 32.0 |
| CDX94777 | Canola | nucleus | 20.54 | 31.42 |
| CDY16798 | Canola | nucleus | 32.04 | 31.13 |
| CDY49005 | Canola | nucleus | 20.31 | 31.06 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 13.38 | 30.81 |
| CDY36940 | Canola | nucleus | 19.95 | 30.69 |
| CDY24168 | Canola | nucleus | 19.72 | 29.84 |
| CDY54111 | Canola | nucleus | 19.72 | 29.63 |
| CDY55738 | Canola | nucleus | 18.54 | 29.26 |
| CDX94484 | Canola | nucleus | 19.01 | 25.88 |
| CDX94528 | Canola | nucleus | 18.19 | 23.17 |
| CDY24162 | Canola | nucleus | 15.14 | 19.85 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078DM32 | InterPro:AUX/IAA_dom |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDX90245 | ProteinID:CDX90245 | ProteinID:CDX90245.1 | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00150811001 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF68 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0004EF32F5 |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g17390D
Coordinates
chrLK031862:-:854772..859115
Molecular Weight (calculated)
94110.7 Da
IEP (calculated)
6.479
GRAVY (calculated)
-0.455
Length
852 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSSAGFNP HPHPHEVTGE KRVLNSELWH ACAGPLVSLP PLGSRVVYFP QGHSEQVAAS TNKEVDAHTP NYPSLQPQLI CQLHNVTMHA DVETDEVYAQ
101: MTLQPLNAQE QKDSYLAAEL GVPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYTQQPPAQE LMARDLHDNE WKFRHIFRGQ PKRHLLTTGW
201: SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RAHRPQTVMP SSVLSSDSMH LGLLAAAAHA ASTNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM
301: RFRMLFETEE SSVRRYMGTI TGICDLDPAR WANSHWRSVK VGWDESTAGD RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPSGLPSFHG LKEDDMGMGM
401: GMSSPLMWDR GLQSMNFQGM GVNPWMQPRL DASGLLGMQN DAYQAMAAAA LQDMRGIDPA KAAASLLQFQ SPSGFSMQPP SLVQPQMLQQ QLSQQHQQQL
501: SQQQQQVVDN HNLSASSAAM SQSNTSLLQS MTPLCHQQSF SDTNGGNNPI TQLHTLLSNF PQDESSQLLN LTRTNSAMTS SGWPSKRPAI DSSFQHSTAV
601: NNNQSVMEQL GQSHTSNVSP NAVSLPPFPS GQEENHSDPH SHLLFGVNID SSSLLIPNGM SNLRSIGIEG GDSTTLPFTS STFNNEFSGT MTTPSSCIEE
701: PGFLQPSENQ QSNTFVKVYK SGSFGRSLDI TKFSSYNELR SELARMFGLE GQLEDPVRSG WQLVFVDREN DVLLLGDDPW PEFVSSVWCI KILSPQEVQQ
801: MGKRGLELLN SAPSSDNVDK VPSNGNCDDF GNRSDPRSLG NGIASVGGSF NY
101: MTLQPLNAQE QKDSYLAAEL GVPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYTQQPPAQE LMARDLHDNE WKFRHIFRGQ PKRHLLTTGW
201: SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RAHRPQTVMP SSVLSSDSMH LGLLAAAAHA ASTNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM
301: RFRMLFETEE SSVRRYMGTI TGICDLDPAR WANSHWRSVK VGWDESTAGD RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPSGLPSFHG LKEDDMGMGM
401: GMSSPLMWDR GLQSMNFQGM GVNPWMQPRL DASGLLGMQN DAYQAMAAAA LQDMRGIDPA KAAASLLQFQ SPSGFSMQPP SLVQPQMLQQ QLSQQHQQQL
501: SQQQQQVVDN HNLSASSAAM SQSNTSLLQS MTPLCHQQSF SDTNGGNNPI TQLHTLLSNF PQDESSQLLN LTRTNSAMTS SGWPSKRPAI DSSFQHSTAV
601: NNNQSVMEQL GQSHTSNVSP NAVSLPPFPS GQEENHSDPH SHLLFGVNID SSSLLIPNGM SNLRSIGIEG GDSTTLPFTS STFNNEFSGT MTTPSSCIEE
701: PGFLQPSENQ QSNTFVKVYK SGSFGRSLDI TKFSSYNELR SELARMFGLE GQLEDPVRSG WQLVFVDREN DVLLLGDDPW PEFVSSVWCI KILSPQEVQQ
801: MGKRGLELLN SAPSSDNVDK VPSNGNCDDF GNRSDPRSLG NGIASVGGSF NY
001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.