Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58711 | Soybean | nucleus | 42.38 | 87.02 |
| GSMUA_Achr8P13630_001 | Banana | cytosol, nucleus, plastid | 28.75 | 77.59 |
| GSMUA_Achr3P23290_001 | Banana | nucleus | 77.7 | 76.46 |
| GSMUA_Achr11P... | Banana | nucleus | 83.15 | 73.49 |
| GSMUA_Achr5P02450_001 | Banana | nucleus | 71.0 | 69.2 |
| GSMUA_Achr11P... | Banana | nucleus | 69.39 | 67.55 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 75.22 | 66.78 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 69.14 | 65.26 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 72.49 | 64.43 |
| Bra010776.1-P | Field mustard | nucleus | 64.44 | 62.5 |
| CDY12048 | Canola | nucleus | 65.55 | 62.46 |
| CDX90245 | Canola | nucleus | 65.92 | 62.44 |
| KRH11131 | Soybean | nucleus | 69.39 | 62.36 |
| CDY02285 | Canola | nucleus | 67.16 | 62.08 |
| KRH21113 | Soybean | nucleus | 68.77 | 61.94 |
| CDY09598 | Canola | nucleus | 66.05 | 61.26 |
| KRH42603 | Soybean | nucleus | 67.16 | 59.89 |
| AT1G30330.3 | Thale cress | nucleus | 68.28 | 58.93 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 37.3 | 58.9 |
| Os12t0613700-01 | Rice | nucleus | 63.94 | 57.4 |
| TraesCS5B01G039800.1 | Wheat | nucleus | 63.32 | 57.35 |
| HORVU5Hr1G009650.20 | Barley | nucleus | 63.2 | 57.24 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 63.44 | 56.95 |
| TraesCS5D01G045700.2 | Wheat | nucleus | 63.44 | 56.89 |
| EES17392 | Sorghum | nucleus | 62.95 | 56.76 |
| Zm00001d041497_P005 | Maize | nucleus | 61.83 | 56.19 |
| GSMUA_Achr4P25960_001 | Banana | nucleus | 55.76 | 56.18 |
| Zm00001d031064_P003 | Maize | nucleus | 62.33 | 56.08 |
| GSMUA_Achr11P... | Banana | nucleus | 55.76 | 55.56 |
| GSMUA_Achr1P08230_001 | Banana | mitochondrion | 40.4 | 49.1 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 34.82 | 45.32 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 44.24 | 41.8 |
| GSMUA_Achr9P08310_001 | Banana | vacuole | 24.91 | 41.27 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 39.9 | 41.18 |
| GSMUA_Achr8P13620_001 | Banana | nucleus | 23.67 | 39.46 |
| GSMUA_Achr9P14090_001 | Banana | nucleus | 44.36 | 39.34 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 46.59 | 38.64 |
| GSMUA_Achr10P... | Banana | nucleus | 31.1 | 37.24 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 39.41 | 37.06 |
| GSMUA_Achr6P12780_001 | Banana | nucleus | 30.86 | 35.78 |
| GSMUA_Achr6P07390_001 | Banana | nucleus | 29.0 | 35.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.76 | 35.28 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 46.59 | 35.24 |
| GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 30.36 | 35.15 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 37.79 | 35.02 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 28.38 | 34.28 |
| GSMUA_Achr10P... | Banana | nucleus | 27.88 | 33.73 |
| GSMUA_Achr6P01740_001 | Banana | nucleus | 42.87 | 33.3 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 27.26 | 33.03 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 33.21 | 32.52 |
| GSMUA_Achr10P... | Banana | nucleus | 33.09 | 32.4 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 38.29 | 31.82 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 32.84 | 30.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.47 | 29.64 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 36.68 | 28.19 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G26580_001 |
| EnsemblPlants:GSMUA_Achr5P26580_001 | EnsemblPlants:GSMUA_Achr5T26580_001 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M0T1Y3 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF68 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0002954540 |
| SEG:seg | : | : | : | : | : |
Description
Auxin response factor 6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G26580_001]
Coordinates
chr5:+:27317530..27325197
Molecular Weight (calculated)
89950.5 Da
IEP (calculated)
6.959
GRAVY (calculated)
-0.424
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSSSGPGN QQQEDTEEQV CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEIDSLPSYP SLPPQLVCQL HNVTMHADVE TDEVYAQMTL
101: QPLSLLEQKD PYLPAELGMP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFL QQPPAQELTA KDLHGNEWRF RHIFRGQPKR HLLTTGWSVF
201: VSAKRLVAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR
301: MLFETEESSV RRYMGTITGI SDIDPVHWPN SHWRSVKVGW DESTAGQRQP RVSLWEIEPL TTFPMYPTSF PFRLKRPWPT GLPSLHGGKD DGISLNLPQM
401: LFQNGGNTGF QSLNFQDISV TPWMRPRLDN PVLSLQPDMY QTMAVAGQKM RIVDTTKNVS PGMLQFQQTQ NITSRTSPIV PSQVLQHGHS QTPQTFLQNL
501: QVNQQQVPRQ HQTQIQQQKI LSNHQKNISS FSQPQNFPDS NGNSVSTAIQ CMMPQVEQLG ASQPAISQHS VILSPFPRRQ YVVDQDGNMD GQNHLLFGVN
601: IDSSSLLVQN GMSNLGHLSN ETDSMNMHYA ASNLVGSSGN DFGLNQAFTV SNGLEPPGLL QAPGNMDSLN QSSGTFVKVY KSGSCGRSLD ITKFSSYHEL
701: RSELGRLFGL EGQLEDPLRS GWQLVFVDRE NDILLVGDDP WQEFVNNVWC IKILMRQEVQ QMGKPSADFL NTAHSKRLPS NSCDEYITRQ DSRSLSTVTA
801: SVGTLEY
101: QPLSLLEQKD PYLPAELGMP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFL QQPPAQELTA KDLHGNEWRF RHIFRGQPKR HLLTTGWSVF
201: VSAKRLVAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR
301: MLFETEESSV RRYMGTITGI SDIDPVHWPN SHWRSVKVGW DESTAGQRQP RVSLWEIEPL TTFPMYPTSF PFRLKRPWPT GLPSLHGGKD DGISLNLPQM
401: LFQNGGNTGF QSLNFQDISV TPWMRPRLDN PVLSLQPDMY QTMAVAGQKM RIVDTTKNVS PGMLQFQQTQ NITSRTSPIV PSQVLQHGHS QTPQTFLQNL
501: QVNQQQVPRQ HQTQIQQQKI LSNHQKNISS FSQPQNFPDS NGNSVSTAIQ CMMPQVEQLG ASQPAISQHS VILSPFPRRQ YVVDQDGNMD GQNHLLFGVN
601: IDSSSLLVQN GMSNLGHLSN ETDSMNMHYA ASNLVGSSGN DFGLNQAFTV SNGLEPPGLL QAPGNMDSLN QSSGTFVKVY KSGSCGRSLD ITKFSSYHEL
701: RSELGRLFGL EGQLEDPLRS GWQLVFVDRE NDILLVGDDP WQEFVNNVWC IKILMRQEVQ QMGKPSADFL NTAHSKRLPS NSCDEYITRQ DSRSLSTVTA
801: SVGTLEY
001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.