Factsheet for GSMUA_Achr6P12780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09750_001
GSMUA_Achr1P26140_001
GSMUA_Achr2P19760_001
GSMUA_Achr3P13070_001
GSMUA_Achr3P28230_001
GSMUA_Achr4P09450_001
GSMUA_Achr4P12950_001
GSMUA_Achr4P18240_001
GSMUA_Achr4P20150_001
GSMUA_Achr5P03960_001
GSMUA_Achr5P14630_001
GSMUA_Achr5P18540_001
GSMUA_Achr6P07390_001
GSMUA_Achr6P12780_001
GSMUA_Achr6P29070_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P18930_001
GSMUA_Achr8P25220_001
GSMUA_Achr9P08310_001
GSMUA_Achr9P22600_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	GSMUA_Achr10P...	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr6P07390_001	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr6P12780_001	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr6P29070_001	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr9P08310_001	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr10P...	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr6P07390_001	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr6P12780_001	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr6P29070_001	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr9P08310_001	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr4P18240_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr5P03960_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr5P14630_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr5P18540_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr8P18930_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr1P09750_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr1P26140_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr3P13070_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr3P28230_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr4P09450_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr4P12950_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr4P20150_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr8P25220_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr9P22600_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_AchrUn_...	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT1G59750.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT1G59750.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT1G59750.1	GSMUA_AchrUn_...	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	80.89	83.53
GSMUA_Achr9P08310_001	Banana	vacuole	52.16	74.54
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	70.26	70.16
GSMUA_Achr6P07390_001	Banana	nucleus	64.94	69.01
KRH26266	Soybean	nucleus	65.37	68.42
KRH06026	Soybean	nucleus	65.09	68.12
EES06968	Sorghum	nucleus	65.52	67.86
VIT_12s0035g01800.t01	Wine grape	nucleus	65.37	67.11
VIT_18s0089g00910.t01	Wine grape	nucleus	62.36	66.87
Os02t0557200-01	Rice	nucleus	65.09	66.81
Solyc01g103050.2.1	Tomato	nucleus	62.36	66.36
Zm00001d050781_P001	Maize	nucleus	60.06	66.35
PGSC0003DMT400053380	Potato	nucleus	62.07	66.06
KRH51289	Soybean	nucleus	63.36	65.43
Os04t0442000-01	Rice	nucleus	62.93	65.08
EES10850	Sorghum	nucleus	61.78	65.05
TraesCS2B01G326400.1	Wheat	nucleus	60.92	64.83
TraesCS2D01G307600.1	Wheat	nucleus	60.78	64.68
TraesCS2A01G309300.1	Wheat	nucleus	60.63	64.53
Zm00001d016838_P001	Maize	nucleus	64.22	63.58
CDY27291	Canola	nucleus	56.47	63.49
HORVU2Hr1G076920.3	Barley	nucleus	60.34	62.87
Zm00001d003601_P006	Maize	nucleus	61.35	62.61
AT1G59750.1	Thale cress	nucleus	59.34	62.11
CDY65065	Canola	nucleus	57.9	60.97
CDY33603	Canola	nucleus	57.76	60.82
Bra035427.1-P	Field mustard	nucleus	58.05	60.75
GSMUA_Achr10P...	Banana	nucleus	48.28	50.37
GSMUA_AchrUn_...	Banana	nucleus	45.83	50.24
GSMUA_Achr7P24330_001	Banana	nucleus	47.99	50.15
GSMUA_Achr2P19760_001	Banana	nucleus	47.7	49.7
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	20.83	48.49
GSMUA_Achr6P08090_001	Banana	nucleus	50.0	42.23
GSMUA_Achr10P...	Banana	nucleus	49.86	42.11
GSMUA_Achr6P16450_001	Banana	nucleus	50.86	40.55
GSMUA_AchrUn_...	Banana	nucleus	47.56	37.44
GSMUA_AchrUn_...	Banana	mitochondrion	24.86	33.86
GSMUA_Achr5P26580_001	Banana	nucleus	35.78	30.86
GSMUA_Achr3P10240_001	Banana	nucleus	27.01	30.32
GSMUA_Achr1P08230_001	Banana	mitochondrion	28.74	30.12
GSMUA_Achr3P23290_001	Banana	nucleus	35.34	30.0
GSMUA_Achr11P...	Banana	nucleus	34.05	29.26
GSMUA_Achr6P19850_001	Banana	nucleus	35.92	29.24
GSMUA_Achr5P02450_001	Banana	nucleus	34.63	29.11
GSMUA_Achr11P...	Banana	nucleus	34.48	28.95
GSMUA_Achr4P25960_001	Banana	nucleus	33.19	28.84
GSMUA_Achr9P18170_001	Banana	nucleus	35.2	28.69
GSMUA_Achr1P20040_001	Banana	nucleus	31.61	28.13
GSMUA_Achr11P...	Banana	nucleus	35.92	27.38
GSMUA_Achr9P14090_001	Banana	nucleus	35.63	27.25
GSMUA_Achr5P00590_001	Banana	nucleus	35.2	26.95
GSMUA_Achr3P05460_001	Banana	nucleus	36.49	26.1
GSMUA_Achr6P36980_001	Banana	nucleus	31.75	25.76
GSMUA_Achr6P01740_001	Banana	nucleus	36.49	24.45
GSMUA_Achr5P05010_001	Banana	nucleus	29.89	23.88
GSMUA_Achr8P23850_001	Banana	nucleus	36.35	23.71
GSMUA_Achr1P20000_001	Banana	nucleus	31.47	22.55
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	29.45	19.52
GSMUA_Achr8P13620_001	Banana	nucleus	11.93	17.15

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G12780_001
EnsemblPlants:GSMUA_Achr6P12780_001	EnsemblPlants:GSMUA_Achr6T12780_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0T6H6
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF24	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002957405
SEG:seg	:	:	:	:	:

Description

Auxin response factor 7 [Source:GMGC_GENE;Acc:GSMUA_Achr6G12780_001]

Coordinates

chr6:+:8555103..8561486

Molecular Weight (calculated)

76919.0 Da

IEP (calculated)

6.672

GRAVY (calculated)

-0.415

Length

696 amino acids

Sequence
(BLAST)

001: MSVANVNISS GTSGDVLYKE LWHACAGPLV TLPRENERVY YFPQGHMEQL EASTNQGLDQ HVPVFNLPSK ILCRVVNVEL RAEPDTDEVY AHIILLPEPN
101: RGEVTSPDPP FSEPERCKVY SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMTQDPPCQ ELVAKDLHRN EWRFRHIFRG QPRRHLLTTG WSVFVSSKRL
201: VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH AITTGTLFSV FYKPRASRSE FIISLNKYIE AKSHKFSVGM RFKMRFEGDD
301: TPERRFSGTI VGAIDKVSSQ WADSEWRSLK VQWDEPSSTL RPDSVSPWEL EPLIAAAPPS AQPVQRIKRA RLPASPVGTP GPSPTPGSWK SQVETTQMFS
401: FSGPQRGEEP YSSYKPACIF SSASQSGSIG FNASNAPSTA INSHAPSTAI NSRLCWPIMT ETQSDTFSAS INREPCDRKQ ETSKGCRLFG IQLIESSGMG
501: EMSPVPTISG VGVDQPAISL EVDSDLQSRP SNIERSDAPA DNSEPEKLCL RSSWETQSRQ PRSCTKVHMQ GMAVGRAVDL TRLCGYDDLL YKLENMFSIE
601: GELSGAVKKW VVVYTDNEDD MMLVGDDPWL EFCSMVRKIY IYTSEEAKRL SPKRKLPPVI GEVVKSGSKK ALFDADADTN AAAGLKGLGG QDDVSG

Best Arabidopsis Sequence Match ( AT1G59750.2 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPD GVWKSPADTP
401: SSVPLFSPPA KAATFGHGGN KSFGVSIGSA FWPTNADSAA ESFASAFNNE STEKKQTNGN VCRLFGFELV ENVNVDECFS AASVSGAVAV DQPVPSNEFD
501: SGQQSEPLNI NQSDIPSGSG DPEKSSLRSP QESQSRQIRS CTKVHMQGSA VGRAIDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM
601: VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLAVNARMQ LKADAEENGN TEGRSSSMAG SR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.