Factsheet for Zm00001d016838_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000358_P001
Zm00001d003601_P006
Zm00001d005300_P001
Zm00001d014013_P002
Zm00001d014507_P002
Zm00001d016838_P001
Zm00001d017284_P001
Zm00001d019712_P001
Zm00001d025871_P001
Zm00001d032683_P001
Zm00001d039267_P005
Zm00001d050781_P001
Zm00001d051172_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	Zm00001d003601_P006	AT1G59750.1	22096563
AT1G59750.1	Zm00001d016838_P001	AT1G59750.1	22096563
AT1G59750.1	Zm00001d050781_P001	AT1G59750.1	22096563
AT1G59750.1	Zm00001d003601_P006	AT1G59750.1	24485461
AT1G59750.1	Zm00001d016838_P001	AT1G59750.1	24485461
AT1G59750.1	Zm00001d050781_P001	AT1G59750.1	24485461
AT1G59750.1	Zm00001d000358_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d014013_P002	AT2G28350.1	22096563
AT1G59750.1	Zm00001d014507_P002	AT2G28350.1	22096563
AT1G59750.1	Zm00001d017284_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d025871_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d032683_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d051172_P001	AT2G28350.1	22096563
AT1G59750.1	Zm00001d005300_P001	AT3G50060.1	17675404
AT1G59750.1	Zm00001d019712_P001	AT3G50060.1	17675404
AT1G59750.1	Zm00001d039267_P005	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050781_P001	Maize	nucleus	79.94	89.21
Os02t0557200-01	Rice	nucleus	79.09	82.01
Zm00001d003601_P006	Maize	nucleus	67.99	70.09
GSMUA_Achr9P08310_001	Banana	vacuole	47.37	68.38
GSMUA_Achr10P...	Banana	nucleus	64.15	66.91
KRH26266	Soybean	nucleus	63.02	66.62
PGSC0003DMT400053380	Potato	nucleus	61.88	66.51
Solyc01g103050.2.1	Tomato	nucleus	61.17	65.75
KRH06026	Soybean	nucleus	62.16	65.71
VIT_12s0035g01800.t01	Wine grape	nucleus	63.16	65.49
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	64.44	64.99
GSMUA_Achr6P07390_001	Banana	nucleus	59.89	64.27
GSMUA_Achr6P12780_001	Banana	nucleus	63.58	64.22
VIT_18s0089g00910.t01	Wine grape	nucleus	58.89	63.79
KRH51289	Soybean	nucleus	60.88	63.5
CDY27291	Canola	nucleus	54.05	61.39
AT1G59750.1	Thale cress	nucleus	56.76	60.0
CDY65065	Canola	nucleus	55.9	59.46
Bra035427.1-P	Field mustard	nucleus	56.19	59.4
CDY33603	Canola	nucleus	55.76	59.3
Zm00001d042267_P003	Maize	nucleus	46.51	39.98
Zm00001d011953_P002	Maize	nucleus	45.8	39.95
Zm00001d041056_P019	Maize	nucleus	47.08	39.22
Zm00001d039267_P005	Maize	nucleus	38.41	39.02
Zm00001d023659_P007	Maize	nucleus	45.38	38.62
Zm00001d049295_P001	Maize	nucleus	45.8	36.76
Zm00001d001879_P036	Maize	nucleus	34.57	29.74
Zm00001d014377_P002	Maize	nucleus	36.13	27.7
Zm00001d041497_P005	Maize	nucleus	34.85	27.59
Zm00001d031064_P003	Maize	nucleus	34.99	27.42
Zm00001d053819_P002	Maize	nucleus	35.14	26.88
Zm00001d026590_P003	Maize	nucleus	31.86	26.42
Zm00001d036593_P001	Maize	plastid	35.7	26.15
Zm00001d001945_P002	Maize	nucleus	33.29	24.68
Zm00001d026540_P002	Maize	nucleus	32.86	24.09
Zm00001d045026_P002	Maize	nucleus	34.99	23.36
Zm00001d031522_P007	Maize	nucleus	34.28	22.19
Zm00001d014690_P014	Maize	nucleus	35.85	21.11
Zm00001d015243_P001	Maize	nucleus	32.15	20.7
Zm00001d052637_P001	Maize	mitochondrion	1.28	10.98

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1D6HAQ3	ProteinID:AQK71784.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF69
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000845822A	EnsemblPlantsGene:Zm00001d016838	EnsemblPlants:Zm00001d016838_P001
EnsemblPlants:Zm00001d016838_T001	SEG:seg	:	:	:	:

Description

ARF-transcription factor 36Auxin response factor 1

Coordinates

chr5:-:177880117..177886035

Molecular Weight (calculated)

78056.0 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.509

Length

703 amino acids

Sequence
(BLAST)

001: MAEAGVARGS GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ HLPLFNLPHK ILCKVVNVEL RAETDSDEVY AQIMLQPQTE
101: VSRFTYIISC GSQSSHCIIV RFFVCSQSEP TSPDPEPPEP ERCNIHSFCK TLTASDTSTH GGFSVLRRHA EECLPQLDMT QNPPWQELVA KDLHGNEWHF
201: RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFVVS
301: VNKYLEAKNH KMSVGMRFKM RFEGDESPER RFSGTIIGMG CMPANSTSPW ANSEWRSLKV QWDEPSAILR PDRVSPWEVE PLDRTNPQPP QPPLRNKRAR
401: PPASPSIAPE LAPVFGFWKS PAEPAQAFSF SGLQRTQELY HSSPSSMFSS SLNVGFNPKY EGPTPNTNHL YWTMRETRTE SYSASINKAP TEKKQESTTS
501: GCRLFGIEIG SSAVSPVVTV ASVGHDPPPP ALSVDAESDQ LSQPSHANKA TDAPAASSDR SPNETESRQA RSCTKVIMQG VAVGRAVDLT RLDGYDDLRR
601: KLEEMFDIPG ELSASLKKWK VIYTDDEDDM MLVGDDPWSE FCRMVKRIYI YSYEEAKSLT PKAKLPAIGG DTGVKPDPSK LPPESDVPQS DSDNSAPVAA
701: DKD

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.