Factsheet for Zm00001d001879_P036

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000288_P001
Zm00001d008201_P001
Zm00001d013071_P001
Zm00001d013302_P002
Zm00001d013707_P001
Zm00001d018414_P001
Zm00001d018973_P001
Zm00001d021279_P002
Zm00001d030993_P001
Zm00001d033319_P001
Zm00001d033976_P002
Zm00001d034463_P001
Zm00001d040541_P001
Zm00001d041416_P001
Zm00001d041418_P001
Zm00001d045203_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	Zm00001d013302_P002	AT1G04250.1	21734647
AT5G37020.1	Zm00001d033976_P002	AT1G04250.1	21734647
AT5G37020.1	Zm00001d041416_P001	AT1G04250.1	21734647
AT5G37020.1	Zm00001d021279_P002	AT1G80390.1	21734647
AT5G37020.1	Zm00001d013302_P002	AT3G23050.1	21734647
AT5G37020.1	Zm00001d033976_P002	AT3G23050.1	21734647
AT5G37020.1	Zm00001d041416_P001	AT3G23050.1	21734647
AT5G37020.1	Zm00001d008201_P001	AT3G62100.1	21734647
AT5G37020.1	Zm00001d040541_P001	AT3G62100.1	21734647
AT5G37020.1	Zm00001d013071_P001	AT4G14560.1	14729917
AT5G37020.1	Zm00001d013707_P001	AT4G14560.1	14729917
AT5G37020.1	Zm00001d018973_P001	AT4G14560.1	14729917
AT5G37020.1	Zm00001d030993_P001	AT4G14560.1	14729917
AT5G37020.1	Zm00001d033319_P001	AT4G14560.1	14729917
AT5G37020.1	Zm00001d034463_P001	AT4G14560.1	14729917
AT5G37020.1	Zm00001d041418_P001	AT4G14560.1	14729917
AT5G37020.1	Zm00001d013071_P001	AT4G14560.1	21734647
AT5G37020.1	Zm00001d013707_P001	AT4G14560.1	21734647
AT5G37020.1	Zm00001d018973_P001	AT4G14560.1	21734647
AT5G37020.1	Zm00001d030993_P001	AT4G14560.1	21734647
AT5G37020.1	Zm00001d033319_P001	AT4G14560.1	21734647
AT5G37020.1	Zm00001d034463_P001	AT4G14560.1	21734647
AT5G37020.1	Zm00001d041418_P001	AT4G14560.1	21734647
AT5G37020.1	Zm00001d000288_P001	AT4G32280.1	21734647
AT5G37020.1	Zm00001d018414_P001	AT4G32280.1	21734647
AT5G37020.1	Zm00001d045203_P001	AT4G32280.1	21734647
AT5G37020.1	Zm00001d013071_P001	AT5G43700.1	21734647
AT5G37020.1	Zm00001d013707_P001	AT5G43700.1	21734647
AT5G37020.1	Zm00001d018973_P001	AT5G43700.1	21734647
AT5G37020.1	Zm00001d030993_P001	AT5G43700.1	21734647
AT5G37020.1	Zm00001d033319_P001	AT5G43700.1	21734647
AT5G37020.1	Zm00001d034463_P001	AT5G43700.1	21734647
AT5G37020.1	Zm00001d041418_P001	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27404	Sorghum	nucleus	97.31	97.07
Os04t0671900-01	Rice	nucleus	93.27	93.15
TraesCS2D01G548900.1	Wheat	nucleus	90.45	88.72
TraesCS2B01G578500.1	Wheat	nucleus	90.45	88.72
TraesCS2A01G547800.1	Wheat	nucleus	90.21	88.69
HORVU2Hr1G121110.32	Barley	nucleus	90.58	88.31
Zm00001d026590_P003	Maize	nucleus	91.31	87.97
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.89	78.93
GSMUA_Achr11P...	Banana	nucleus	64.26	64.81
GSMUA_Achr4P25960_001	Banana	nucleus	63.04	64.29
KRH30740	Soybean	nucleus	64.26	62.2
KRH17251	Soybean	nucleus	64.01	62.04
KRG98044	Soybean	nucleus	63.77	61.95
KRH72896	Soybean	nucleus	63.89	61.63
Solyc02g037530.2.1	Tomato	nucleus	63.04	61.16
Solyc03g031970.2.1	Tomato	nucleus	62.67	60.66
CDY39274	Canola	nucleus	57.04	59.82
Bra004125.1-P	Field mustard	nucleus	56.92	59.62
AT5G37020.1	Thale cress	nucleus	59.0	59.43
GSMUA_AchrUn_...	Banana	mitochondrion	37.09	59.3
CDY07460	Canola	nucleus	56.67	59.28
PGSC0003DMT400048034	Potato	nucleus	53.98	58.64
CDX74594	Canola	nucleus	58.14	58.0
CDY53537	Canola	nucleus	57.77	57.99
Bra028110.1-P	Field mustard	nucleus	58.14	56.28
VIT_04s0079g00200.t01	Wine grape	nucleus	47.86	55.3
Zm00001d014377_P002	Maize	nucleus	60.47	53.87
Zm00001d052637_P001	Maize	mitochondrion	5.39	53.66
Zm00001d031064_P003	Maize	nucleus	58.75	53.51
Zm00001d053819_P002	Maize	nucleus	59.85	53.21
Zm00001d041497_P005	Maize	nucleus	57.65	53.04
Zm00001d036593_P001	Maize	plastid	59.98	51.04
GSMUA_Achr8P13620_001	Banana	nucleus	24.48	41.32
Zm00001d050781_P001	Maize	nucleus	28.89	37.46
Zm00001d045026_P002	Maize	nucleus	48.1	37.32
Zm00001d016838_P001	Maize	nucleus	29.74	34.57
Zm00001d003601_P006	Maize	nucleus	28.27	33.87
Zm00001d026540_P002	Maize	nucleus	38.56	32.85
Zm00001d001945_P002	Maize	nucleus	37.94	32.7
Zm00001d031522_P007	Maize	nucleus	42.35	31.86
Zm00001d011953_P002	Maize	nucleus	29.62	30.02
Zm00001d042267_P003	Maize	nucleus	29.99	29.95
Zm00001d014690_P014	Maize	nucleus	43.45	29.73
Zm00001d023659_P007	Maize	nucleus	29.99	29.66
Zm00001d015243_P001	Maize	nucleus	39.29	29.4
Zm00001d041056_P019	Maize	nucleus	29.87	28.91
Zm00001d039267_P005	Maize	nucleus	23.38	27.6
Zm00001d049295_P001	Maize	nucleus	29.38	27.4

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1D6DTV9	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	ProteinID:ONM12258.1	ProteinID:ONM12259.1
ProteinID:ONM12269.1	ProteinID:ONM12273.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0002211477	EnsemblPlantsGene:Zm00001d001879	EnsemblPlants:Zm00001d001879_P036	EnsemblPlants:Zm00001d001879_T036	SEG:seg

Description

ARF-transcription factor 3Auxin response factor 3

Coordinates

chr2:+:2248277..2255954

Molecular Weight (calculated)

90998.0 Da

IEP (calculated)

6.374

GRAVY (calculated)

-0.474

Length

817 amino acids

Sequence
(BLAST)

001: MSSSSAASIG QPPPPAPPPE EEKKCLNSEL WHACAGPLVC LPTVGTRVVY FPQGHSEQVA ASTNKEVDGH IPNYPNLPPQ LICQLHDVTM HADVETDEVY
101: AQMTLQPLNP QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD VEWKFRHIFR GQPKRHLLTT
201: GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRHATRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPT EFVIPLSKYI KAVFHTRISV
301: GMRFRMLFET EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM YPSLFPLRVK HPWYSGLAAL HDDSNALMWL
401: RGVTGEGGFH SLNFQSPGIG SWGQQRLHPS LLSNDHDQYQ AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EQCNLNPLLQ QQILQQASQQ QMVSSDAQNI
501: QSVLNPGAIQ QQLHQLQQMQ HTHNDQKQKI QPDQQYQVAS SAVLPSPTSL PSHLREKFGF SDPNVNSSSF ISSSSNENML ESNFLQVSSK SVDLSRFNQP
601: VVSEQQQPQQ QQAWKQKFMG SQSMSFGGSV SLNSPTSKDG SVDNKVGRDV QNQSLFSPQV DSSSLLYNMV PNLTSNVADN NISAFPSGST YLQSPMYGCL
701: DDSSGLLQNT GENDPTTRTF VKVYKSGSVG RSLDITRFSN YAELREELGQ MFGIKGQLDD PDRSGWQLVF VDRENDVLLL GDDPWESFVN SVWYIKILSP
801: EDVHKMGKPG NDPRYLS

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.