Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d026480_P001 | |
| Zm00001d045026_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | Zm00001d045026_P002 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | Zm00001d045026_P002 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | Zm00001d026480_P001 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31308 | Sorghum | cytosol | 81.55 | 85.28 |
| Os02t0805100-01 | Rice | nucleus | 58.25 | 65.93 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 52.91 | 62.64 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 51.94 | 60.45 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 49.51 | 59.3 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 50.0 | 58.86 |
| Zm00001d000288_P001 | Maize | cytosol | 45.15 | 47.21 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 26.7 | 46.22 |
| Zm00001d045203_P001 | Maize | cytosol | 45.63 | 43.52 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 29.61 | 42.07 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 16.99 | 38.46 |
| PGSC0003DMT400079375 | Potato | cytosol | 29.13 | 29.7 |
| Solyc07g008020.2.1 | Tomato | cytosol | 27.67 | 29.08 |
| KRH20139 | Soybean | nucleus | 28.16 | 28.16 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 30.58 | 27.75 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 24.76 | 27.72 |
| KRH03666 | Soybean | cytosol | 26.7 | 27.64 |
| PGSC0003DMT400035770 | Potato | cytosol | 28.64 | 26.94 |
| Zm00001d008201_P001 | Maize | cytosol | 16.99 | 26.92 |
| Solyc08g021820.2.1 | Tomato | nucleus | 28.64 | 25.99 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 29.61 | 25.21 |
| KRH52428 | Soybean | nucleus | 27.67 | 25.11 |
| KRH61758 | Soybean | nucleus | 26.21 | 23.89 |
| CDX68829 | Canola | nucleus | 25.24 | 22.81 |
| Zm00001d049715_P001 | Maize | nucleus | 25.73 | 22.75 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 19.9 | 22.65 |
| Bra011332.1-P | Field mustard | nucleus | 25.24 | 22.51 |
| CDX75231 | Canola | nucleus | 25.24 | 22.51 |
| CDX72351 | Canola | nucleus | 26.7 | 22.27 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 24.27 | 21.93 |
| AT4G32280.1 | Thale cress | cytosol | 26.7 | 21.91 |
| CDY13478 | Canola | nucleus | 25.73 | 21.81 |
| Bra023958.1-P | Field mustard | nucleus | 25.73 | 21.81 |
| Zm00001d051911_P002 | Maize | nucleus | 31.07 | 21.77 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 25.24 | 21.05 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 21.84 | 19.65 |
| Zm00001d016277_P002 | Maize | nucleus | 24.76 | 17.06 |
| Zm00001d049141_P002 | Maize | nucleus | 23.79 | 13.8 |
| Zm00001d004697_P001 | Maize | nucleus | 22.33 | 13.18 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 22.33 | 12.89 |
| Zm00001d038784_P001 | Maize | nucleus | 19.9 | 11.61 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1D6HNP4 | ProteinID:AQK75912.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF88 |
| SUPFAM:SSF54277 | UniParc:UPI000221DDA7 | EnsemblPlantsGene:Zm00001d018414 | EnsemblPlants:Zm00001d018414_P001 | EnsemblPlants:Zm00001d018414_T001 | SEG:seg |
Description
Aux/IAA-transcription factor 24IAA9-auxin-responsive Aux/IAA family member
Coordinates
chr5:+:220284286..220285517
Molecular Weight (calculated)
22019.7 Da
IEP (calculated)
6.676
GRAVY (calculated)
-0.567
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLAPP SARRPTPMTI DQQQQQQRHL AEDELSSTSS DHHPCAARSG KRGFAEAFQE TAAAATTTTL PLFDDGSSCG GRSGGGKRPL VGWPPLSSAR
101: SRACGGGAAK YVKVKKEGDA IGRKVDLSLH ASYDELLATL ARMFPTNNGS QDDKEISSKS TAAATTTTSH RDVVVTYEDG EGDWMLLGDV PWDDFARSVK
201: RLKLLG
101: SRACGGGAAK YVKVKKEGDA IGRKVDLSLH ASYDELLATL ARMFPTNNGS QDDKEISSKS TAAATTTTSH RDVVVTYEDG EGDWMLLGDV PWDDFARSVK
201: RLKLLG
001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSQVVGWP PIGSHRMNSL VNNQATKSAR
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV
Arabidopsis Description
IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.