Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011332.1-P | Field mustard | nucleus | 87.72 | 86.58 |
| CDX75231 | Canola | nucleus | 87.72 | 86.58 |
| CDY13478 | Canola | nucleus | 82.02 | 76.95 |
| CDX72351 | Canola | nucleus | 81.58 | 75.3 |
| AT4G32280.1 | Thale cress | cytosol | 72.37 | 65.74 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 17.11 | 42.86 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 15.79 | 35.29 |
| PGSC0003DMT400035770 | Potato | cytosol | 33.77 | 35.16 |
| KRH61758 | Soybean | nucleus | 34.65 | 34.96 |
| CDY46895 | Canola | cytosol | 10.96 | 34.72 |
| KRH52428 | Soybean | nucleus | 33.77 | 33.92 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 11.84 | 32.93 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 17.11 | 32.77 |
| Solyc08g021820.2.1 | Tomato | nucleus | 31.58 | 31.72 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 32.89 | 30.99 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 30.7 | 30.84 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 19.3 | 30.34 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 22.37 | 29.65 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 19.3 | 29.33 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 22.37 | 29.31 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 22.37 | 29.14 |
| CDX95843 | Canola | plastid | 19.74 | 29.03 |
| CDY71609 | Canola | nucleus, plastid | 19.74 | 28.66 |
| CDX92140 | Canola | nucleus, plastid | 19.74 | 28.48 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 21.93 | 28.25 |
| CDX82361 | Canola | cytosol, plastid | 19.3 | 28.03 |
| KXG19391 | Sorghum | nucleus | 25.0 | 27.94 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 19.3 | 27.5 |
| Os06t0166500-01 | Rice | nucleus | 21.93 | 27.32 |
| Os02t0805100-01 | Rice | nucleus | 21.49 | 26.92 |
| KXG31308 | Sorghum | cytosol | 23.25 | 26.9 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 19.74 | 26.16 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 17.98 | 25.95 |
| Zm00001d045203_P001 | Maize | cytosol | 24.56 | 25.93 |
| Zm00001d000288_P001 | Maize | cytosol | 22.37 | 25.89 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 18.86 | 25.6 |
| Zm00001d018414_P001 | Maize | nucleus | 22.81 | 25.24 |
| CDY51701 | Canola | nucleus | 21.93 | 24.88 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 19.3 | 24.86 |
| CDX67874 | Canola | plastid | 18.42 | 24.28 |
| CDY25089 | Canola | plastid | 17.98 | 23.7 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 17.98 | 23.56 |
| CDX87072 | Canola | cytosol | 17.98 | 23.43 |
| CDY58757 | Canola | plastid | 17.54 | 23.26 |
| CDY11402 | Canola | plastid | 17.98 | 23.16 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 17.54 | 22.99 |
| CDY27511 | Canola | cytosol, plastid | 17.54 | 22.99 |
| CDX89814 | Canola | nucleus | 23.25 | 22.55 |
| CDY19477 | Canola | nucleus | 23.25 | 22.55 |
| CDY18243 | Canola | nucleus | 22.81 | 22.51 |
| CDY53196 | Canola | nucleus | 22.37 | 22.47 |
| CDY17158 | Canola | nucleus | 23.25 | 22.46 |
| CDY48005 | Canola | cytosol, plastid | 17.11 | 22.41 |
| CDY38374 | Canola | nucleus | 23.25 | 22.27 |
| CDY59182 | Canola | nucleus | 21.93 | 22.22 |
| CDX84693 | Canola | nucleus | 23.25 | 21.9 |
| CDY35203 | Canola | nucleus | 23.25 | 21.81 |
| CDX79522 | Canola | nucleus | 23.25 | 21.54 |
| CDY19790 | Canola | cytosol | 17.54 | 20.51 |
| CDY46058 | Canola | plastid | 14.91 | 20.36 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 23.25 | 19.56 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 22.81 | 19.19 |
| CDY22876 | Canola | nucleus | 21.05 | 18.97 |
| CDX82399 | Canola | nucleus | 21.93 | 18.38 |
| CDX87863 | Canola | nucleus | 20.18 | 18.11 |
| CDY33844 | Canola | nucleus | 19.74 | 17.79 |
| CDY53439 | Canola | nucleus | 21.05 | 17.58 |
| CDY46538 | Canola | nucleus | 20.61 | 17.41 |
| CDX75884 | Canola | cytosol | 20.18 | 16.97 |
| CDY34957 | Canola | nucleus | 19.74 | 16.73 |
| CDY43104 | Canola | nucleus | 18.86 | 16.1 |
| CDY64626 | Canola | cytosol | 18.86 | 15.99 |
| CDX92077 | Canola | nucleus | 18.86 | 15.09 |
| CDX92888 | Canola | nucleus | 24.56 | 13.83 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078BY47 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX68829 |
| ProteinID:CDX68829 | ProteinID:CDX68829.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00130550001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 | SUPFAM:SSF54277 | UniParc:UPI0004EDD612 | SEG:seg | : |
Description
BnaC01g06240D
Coordinates
chrLK031789:+:1463659..1464975
Molecular Weight (calculated)
26487.1 Da
IEP (calculated)
6.039
GRAVY (calculated)
-0.750
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDLDLTLS PHTNSSNFGF GFDLNKHLDT KEKRFETMLG LENTEEDFYV PKPCSFSLNG QPDEKDEDPL ESDSSIAYDE EENCKVVGWP PIKSSMKKYL
101: NYRHHSRNHP YHHHGRRINI SNPAATIERV RPSKSSMYVK VKMDGVAITR KVDIKLFDSY ESLTNSLITM FSQYQDCDRE DTNFKFTFQG KEGDWLLPGD
201: APWKIFAESV HRISITRDCP CPYTRLLF
101: NYRHHSRNHP YHHHGRRINI SNPAATIERV RPSKSSMYVK VKMDGVAITR KVDIKLFDSY ESLTNSLITM FSQYQDCDRE DTNFKFTFQG KEGDWLLPGD
201: APWKIFAESV HRISITRDCP CPYTRLLF
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.