Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0653300-00 | |
| Os06t0196700-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | Os06t0196700-02 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | Os06t0196700-02 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | Os04t0653300-00 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 36.07 | 64.71 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 26.23 | 58.54 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 46.45 | 56.67 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 53.01 | 56.4 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 48.63 | 56.33 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 49.18 | 56.25 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 49.73 | 54.17 |
| KXG19391 | Sorghum | nucleus | 59.56 | 53.43 |
| Zm00001d000288_P001 | Maize | cytosol | 57.38 | 53.3 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 50.82 | 52.54 |
| Zm00001d045203_P001 | Maize | cytosol | 56.83 | 48.15 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 30.6 | 47.06 |
| Os02t0805100-01 | Rice | nucleus | 44.81 | 45.05 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 33.33 | 42.07 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 19.13 | 38.46 |
| Os01t0286900-01 | Rice | nucleus | 23.5 | 37.39 |
| PGSC0003DMT400079375 | Potato | cytosol | 32.24 | 29.21 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 35.52 | 28.63 |
| Solyc07g008020.2.1 | Tomato | cytosol | 30.6 | 28.57 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 27.32 | 27.17 |
| PGSC0003DMT400035770 | Potato | cytosol | 31.69 | 26.48 |
| KRH03666 | Soybean | cytosol | 27.87 | 25.63 |
| Solyc08g021820.2.1 | Tomato | nucleus | 31.69 | 25.55 |
| KRH52428 | Soybean | nucleus | 31.69 | 25.55 |
| KRH20139 | Soybean | nucleus | 28.42 | 25.24 |
| KRH61758 | Soybean | nucleus | 31.15 | 25.22 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 32.79 | 24.79 |
| Os02t0723400-02 | Rice | nucleus | 25.68 | 22.93 |
| Os08t0109400-01 | Rice | nucleus | 29.51 | 21.95 |
| CDX68829 | Canola | nucleus | 27.32 | 21.93 |
| Bra011332.1-P | Field mustard | nucleus | 27.32 | 21.64 |
| CDX75231 | Canola | nucleus | 27.32 | 21.64 |
| AT4G32280.1 | Thale cress | cytosol | 28.42 | 20.72 |
| Os01t0190300-01 | Rice | nucleus | 26.78 | 20.59 |
| CDX72351 | Canola | nucleus | 27.32 | 20.24 |
| Os02t0817600-02 | Rice | nucleus | 30.6 | 19.93 |
| CDY13478 | Canola | nucleus | 26.23 | 19.75 |
| Bra023958.1-P | Field mustard | nucleus | 26.23 | 19.75 |
| Os02t0228900-01 | Rice | nucleus | 27.87 | 17.0 |
| Os05t0523300-01 | Rice | nucleus | 25.68 | 14.37 |
| Os01t0741900-01 | Rice | nucleus | 25.14 | 13.73 |
| Os11t0221000-01 | Rice | nucleus | 15.85 | 10.07 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:4340245 | EMBL:AK102541 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| ProteinID:BAD67602.1 | ProteinID:BAD67865.1 | ProteinID:BAF18829.2 | ProteinID:BAS96336.1 | ProteinID:EAZ35952.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | EnsemblPlantsGene:Os06g0166500 | EnsemblPlants:Os06t0166500-01 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF38 | UniProt:Q5VRR0 | SUPFAM:SSF54277 | UniParc:UPI000045791B | RefSeq:XP_015641983.1 |
| SEG:seg | : | : | : | : | : |
Description
IAA20Similar to Auxin-responsive protein IAA20 (Indoleacetic acid-induced protein 20). (Os06t0166500-01)
Coordinates
chr6:-:3342464..3346318
Molecular Weight (calculated)
19898.5 Da
IEP (calculated)
6.130
GRAVY (calculated)
-0.632
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLRLA LPSPSPSPAT ATAAGSELDL LNSAPGSCRK RGFEEALGGF KTDDDNDDGN GRGGDGDSDG EMGNKRRKLV GWPPVKCLHR RRDGGCGGGY
101: VKVKMEGLAI GRKLDLSILG SYAELLDTLH LMFPSTNQED GHDRRRRHPY AVTYEDGEGD WMQVGDVPWE AFAKSVKRLK ILV
101: VKVKMEGLAI GRKLDLSILG SYAELLDTLH LMFPSTNQED GHDRRRRHPY AVTYEDGEGD WMQVGDVPWE AFAKSVKRLK ILV
001: MEVSNSCSSF SSSSVDSTKP SPSESSVNLS LSLTFPSTSP QREARQDWPP IKSRLRDTLK GRRLLRRGDD TSLFVKVYME GVPIGRKLDL CVFSGYESLL
101: ENLSHMFDTS IICGNRDRKH HVLTYEDKDG DWMMVGDIPW DMFLETVRRL KITRPERY
101: ENLSHMFDTS IICGNRDRKH HVLTYEDKDG DWMMVGDIPW DMFLETVRRL KITRPERY
Arabidopsis Description
IAA31Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178V8S2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.