Factsheet for Solyc07g008020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079375	Potato	cytosol	89.29	86.63
VIT_11s0016g05640.t01	Wine grape	cytosol	45.92	48.91
TraesCS7D01G128200.1	Wheat	cytosol, mitochondrion	22.45	43.14
TraesCS7A01G129000.1	Wheat	nucleus	17.35	41.46
KRH20139	Soybean	nucleus	41.33	39.32
KRH03666	Soybean	cytosol	39.8	39.2
GSMUA_Achr9P26900_001	Banana	plastid	22.45	36.97
Solyc06g066020.2.1	Tomato	cytoskeleton, cytosol, nucleus	41.33	33.47
TraesCS7D01G127900.1	Wheat	nucleus	25.51	33.33
GSMUA_Achr9P26910_001	Banana	nucleus	23.98	32.41
Solyc08g021820.2.1	Tomato	nucleus	36.22	31.28
TraesCS7D01G128100.1	Wheat	nucleus	25.51	31.25
HORVU6Hr1G088140.2	Barley	cytosol, mitochondrion, nucleus	27.55	31.03
Os02t0805100-01	Rice	nucleus	28.57	30.77
Os06t0166500-01	Rice	nucleus	28.57	30.6
HORVU7Hr1G026970.2	Barley	cytosol	25.0	29.17
TraesCS6D01G357500.1	Wheat	cytosol, mitochondrion, nucleus	25.51	29.07
TraesCS7B01G029000.1	Wheat	cytosol	25.51	29.07
TraesCS6A01G373300.1	Wheat	cytosol, nucleus, plastid	25.51	28.57
TraesCS7D01G127800.1	Wheat	cytosol	22.96	28.48
TraesCS7B01G029100.1	Wheat	nucleus	25.51	28.25
KXG19391	Sorghum	nucleus	29.08	27.94
KXG31308	Sorghum	cytosol	28.06	27.92
TraesCS6B01G411000.1	Wheat	cytosol, mitochondrion, nucleus	25.0	27.68
Zm00001d018414_P001	Maize	nucleus	29.08	27.67
Zm00001d000288_P001	Maize	cytosol	27.04	26.9
Zm00001d045203_P001	Maize	cytosol	29.08	26.39
Solyc12g096980.1.1	Tomato	nucleus	26.53	22.32
Solyc09g090910.1.1	Tomato	nucleus	29.08	20.21
Solyc03g121060.2.1	Tomato	nucleus	26.53	18.12
Solyc09g064530.2.1	Tomato	nucleus	29.08	17.81

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPX5	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379454	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF38
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc07g008020.2	EnsemblPlants:Solyc07g008020.2.1	UniParc:UPI000243DC12	SEG:seg	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPX5]

Coordinates

chr7:+:2730891..2732677

Molecular Weight (calculated)

22316.7 Da

IEP (calculated)

8.394

GRAVY (calculated)

-0.611

Length

196 amino acids

Sequence
(BLAST)

001: MMELQLGLAL YGNSTKGYNL DLNKGRSSQI LDVQDENDVN VLQTLPLLLL WDKHNDDHQN NEHKRKDIGD EDGVAGWPPI NSLRKKLCHR SRRGAMNYVT
101: VENGGVSGGR GSIYKYVKVK MEGVGIARKI DLTLFHSYNK LTDTLISMFG KNKEIGDVYK LTYQDKEGDW LLAGDVPWRT FVGSVQRLKL IRDEDY

Best Arabidopsis Sequence Match ( AT4G32280.1 )
(BLAST)

001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F

Arabidopsis Description

IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.