Factsheet for Solyc03g121060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057200.2.1
Solyc01g103050.2.1
Solyc02g037530.2.1
Solyc03g031970.2.1
Solyc03g059310.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g008850.2.1
Solyc06g053840.2.1
Solyc07g042260.2.1
Solyc07g064950.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc11g069190.1.1
Solyc12g098990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51950.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT1G51950.1	Solyc07g042260.2.1	AT1G19220.1	18505759
AT1G51950.1	Solyc07g042260.2.1	AT1G19220.1	21734647
AT1G51950.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT1G51950.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT1G51950.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT1G51950.1	Solyc01g057200.2.1	AT3G06430.1	21798944
AT1G51950.1	Solyc12g098990.1.1	AT3G06430.1	21798944
AT1G51950.1	Solyc03g059310.2.1	AT3G18140.1	21798944
AT1G51950.1	Solyc09g083290.2.1	AT3G23050.1	21798944
AT1G51950.1	Solyc04g054280.1.1	AT4G14560.1	21734647
AT1G51950.1	Solyc06g053840.2.1	AT4G14560.1	21734647
AT1G51950.1	Solyc09g083280.2.1	AT4G14560.1	21734647
AT1G51950.1	Solyc04g054280.1.1	AT4G14560.1	21798944
AT1G51950.1	Solyc06g053840.2.1	AT4G14560.1	21798944
AT1G51950.1	Solyc09g083280.2.1	AT4G14560.1	21798944
AT1G51950.1	Solyc08g008380.2.1	AT4G23980.1	21734647
AT1G51950.1	Solyc08g082630.2.1	AT4G23980.1	21734647
AT1G51950.1	Solyc07g042260.2.1	AT5G20730.1	18505759
AT1G51950.1	Solyc07g042260.2.1	AT5G20730.1	21734647
AT1G51950.1	Solyc02g037530.2.1	AT5G37020.1	21734647
AT1G51950.1	Solyc03g031970.2.1	AT5G37020.1	21734647
AT1G51950.1	Solyc07g064950.2.1	AT5G55220.1	21798944
AT1G51950.1	Solyc11g069190.1.1	AT5G60450.1	22096563
AT3G16500.1	Solyc05g008850.2.1	AT1G15050.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006709	Potato	nucleus	89.55	90.81
KRH09948	Soybean	nucleus	60.28	54.06
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	40.07	50.44
KRH44271	Soybean	nucleus	54.7	50.16
KRH47203	Soybean	nucleus	55.05	49.84
CDY22876	Canola	nucleus	43.55	49.41
CDY33844	Canola	nucleus	43.55	49.41
KRH23388	Soybean	nucleus	59.23	49.13
Bra018938.1-P	Field mustard	nucleus	43.21	49.01
TraesCS1D01G123500.1	Wheat	nucleus	38.68	48.9
TraesCS1A01G122600.2	Wheat	nucleus	38.33	48.89
Zm00001d010360_P001	Maize	cytosol, nucleus	37.98	47.81
CDX87863	Canola	nucleus	41.46	46.85
AT3G16500.1	Thale cress	nucleus	43.55	46.47
AT1G51950.1	Thale cress	nucleus	43.21	46.44
Bra014303.1-P	Field mustard	nucleus	43.55	46.3
HORVU1Hr1G028170.4	Barley	cytosol, nucleus, plastid	39.72	46.15
CDY64626	Canola	cytosol	43.21	46.1
CDY43104	Canola	nucleus	42.86	46.07
CDY46538	Canola	nucleus	43.21	45.93
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	37.28	45.53
CDY34957	Canola	nucleus	42.51	45.35
Bra021184.1-P	Field mustard	nucleus	42.51	45.35
CDY53439	Canola	nucleus	42.51	44.69
Zm00001d039513_P001	Maize	cytosol, nucleus, plastid	35.54	44.54
Os01t0190300-01	Rice	nucleus	36.59	44.12
CDX75884	Canola	cytosol	41.12	43.54
TraesCS3B01G127400.1	Wheat	nucleus	34.84	43.48
Bra022164.1-P	Field mustard	nucleus	42.86	43.16
CDX92077	Canola	nucleus	42.86	43.16
CDX82399	Canola	nucleus	40.77	43.01
Bra001634.1-P	Field mustard	nucleus	40.77	43.01
VIT_09s0002g03410.t01	Wine grape	nucleus	65.51	42.82
TraesCS3D01G110200.1	Wheat	nucleus	34.15	42.61
EES17832	Sorghum	nucleus	35.89	42.56
HORVU3Hr1G019750.4	Barley	cytosol, nucleus, plastid	35.19	41.22
Zm00001d037691_P003	Maize	cytosol, nucleus	34.49	40.08
Os02t0228900-01	Rice	nucleus	41.81	40.0
OQU84670	Sorghum	nucleus	40.07	39.38
TraesCS3A01G108400.1	Wheat	cytosol, nucleus, peroxisome	34.49	39.29
TraesCS3D01G276600.1	Wheat	cytosol, mitochondrion, nucleus	45.64	39.1
GSMUA_AchrUn_...	Banana	nucleus	41.81	38.96
Os01t0741900-01	Rice	nucleus	45.3	38.81
Zm00001d016277_P002	Maize	nucleus	40.42	38.8
TraesCS3A01G276500.1	Wheat	cytosol, mitochondrion, nucleus	45.3	38.12
TraesCS3B01G310500.1	Wheat	cytosol, mitochondrion, nucleus	45.3	37.9
GSMUA_Achr7P13680_001	Banana	nucleus	48.08	37.6
Os05t0523300-01	Rice	nucleus	42.51	37.31
HORVU3Hr1G070620.5	Barley	cytosol, mitochondrion, nucleus	45.64	37.11
TraesCS1A01G343300.1	Wheat	nucleus	37.28	36.39
TraesCS1D01G345400.1	Wheat	nucleus	37.28	36.27
TraesCS1B01G356600.1	Wheat	cytosol	37.28	36.03
Zm00001d043515_P002	Maize	cytosol, mitochondrion, nucleus	43.55	35.01
KXG33336	Sorghum	nucleus	43.9	34.52
Zm00001d038784_P001	Maize	nucleus	41.12	33.43
KXG22376	Sorghum	nucleus	38.68	32.17
Solyc12g096980.1.1	Tomato	nucleus	24.74	30.47
OQU86163	Sorghum	golgi, plastid	35.89	28.77
Solyc09g090910.1.1	Tomato	nucleus	27.53	28.01
Solyc07g008020.2.1	Tomato	cytosol	18.12	26.53
Solyc09g064530.2.1	Tomato	nucleus	28.22	25.31
Solyc08g021820.2.1	Tomato	nucleus	19.16	24.23
Solyc06g066020.2.1	Tomato	cytoskeleton, cytosol, nucleus	19.51	23.14

Protein Annotations

MapMan:11.2.2.1.2	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPX0	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379449	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF2
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc03g121060.2	EnsemblPlants:Solyc03g121060.2.1	UniParc:UPI000243DC0D	SEG:seg	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPX0]

Coordinates

chr3:+:69297643..69300151

Molecular Weight (calculated)

31927.5 Da

IEP (calculated)

9.447

GRAVY (calculated)

-0.782

Length

287 amino acids

Sequence
(BLAST)

001: MEGYSQKWLM QRGEEINHGN SEEKKLELRL GPPNGDWSCG EKDESFYPFS YMSTTKGNNR DNHAQNFSSF LQLQSTAQKQ SQRVQESVCT KTADLQSTEK
101: KKAFSQTATV QNSAQKRTAP APVVGWPPIR SFRKNLASSS SVKSASETQN VVPNKSANKK PMEICQKGLF VKINMDGIPI GRKVDLKAYD SYHKLSSAVD
201: QLFRGLVAAQ NDSSAGGNNE KKEDEEKAIS GLLDGSGEYT LVYEDNEGDR MLVGDVPWHM FVSTVKRLRV LKSSELSTLT RATKQLT

Best Arabidopsis Sequence Match ( AT3G16500.1 )
(BLAST)

001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH

Arabidopsis Description

IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.