Factsheet for Solyc12g098990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073910.2.1
Solyc02g082100.2.1
Solyc02g092930.1.1
Solyc03g063280.2.1
Solyc03g115770.2.1
Solyc03g122030.1.1
Solyc06g069690.2.1
Solyc07g066200.2.1
Solyc08g078700.2.1
Solyc10g005220.2.1
Solyc10g080540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT3G06430.1	Solyc10g005220.2.1	AT1G30860.1	21798944
AT3G06430.1	Solyc02g092930.1.1	AT2G23290.1	21798944
AT3G06430.1	Solyc03g122030.1.1	AT3G14180.1	21798944
AT3G06430.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT3G06430.1	Solyc01g073910.2.1	AT5G06710.1	21798944
AT3G06430.1	Solyc10g080540.1.1	AT5G06710.1	21798944
AT3G06430.1	Solyc03g063280.2.1	AT5G06780.1	21798944
AT3G06430.1	Solyc07g066200.2.1	AT5G56250.1	21798944
AT3G06430.1	Solyc03g115770.2.1	AT5G61380.1	21798944
AT3G06430.1	Solyc06g069690.2.1	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011734	Potato	plastid	95.35	95.35
Solyc01g057200.2.1	Tomato	plastid	69.49	73.19
VIT_05s0020g00690.t01	Wine grape	plastid	69.29	68.88
KRH02371	Soybean	plastid	65.66	66.6
KRH02451	Soybean	plastid	65.66	66.6
CDY24692	Canola	plastid	63.84	65.83
CDY05264	Canola	plastid	64.04	64.69
AT3G06430.1	Thale cress	plastid	63.43	64.61
Bra020748.1-P	Field mustard	plastid	64.04	64.56
GSMUA_Achr11P...	Banana	plastid	63.03	57.46
Os03t0309800-02	Rice	plastid	56.77	56.09
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	57.37	53.89
KRH37687	Soybean	plastid	52.73	53.81
TraesCS4D01G132900.3	Wheat	plastid	57.17	52.31
TraesCS4A01G178100.5	Wheat	plastid	57.17	52.31
EER97871	Sorghum	plastid	57.98	51.25
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	57.78	49.48
Zm00001d018693_P001	Maize	plastid	56.16	48.69
Solyc01g006500.2.1	Tomato	plastid	36.36	36.89
Solyc08g045780.2.1	Tomato	cytosol	31.31	33.7
Solyc04g054270.2.1	Tomato	plastid	20.2	20.92
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	19.8	15.73
Solyc07g043600.2.1	Tomato	nucleus	17.78	15.17
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	11.31	14.7
Solyc01g107320.2.1	Tomato	plastid	21.62	13.06
Solyc08g045850.2.1	Tomato	nucleus	17.37	12.3
Solyc07g017760.1.1	Tomato	plastid	20.61	12.11
Solyc03g113630.2.1	Tomato	nucleus	17.98	10.35
Solyc06g009520.2.1	Tomato	nucleus, plastid	15.76	9.27
Solyc04g015950.1.1	Tomato	plastid	15.15	8.82

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4DHS1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc12g098990.1	EnsemblPlants:Solyc12g098990.1.1
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276A52A	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:66313350..66316183

Molecular Weight (calculated)

56687.3 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.379

Length

495 amino acids

Sequence
(BLAST)

001: MATNSISLSS SSSLFLSPLI HPAGGNIRRL FDFRRPLIAV ICCRASSSVA FPKKKHWKQG EYPGFTEQSG FKNNKRTPIK NIKKKLDRKS NAKAWVNTIT
101: EALSEYIEKK QWVQALEVFE MLKEQPFYQS KESTYMKLLV LLGRCGQPGK AQQLFDTMIE EGLDPTPEFY TALVGAYCRS NIIDKAFTIL QRMIELPYCQ
201: PNVYTYSILI KACVDASRFD LVDSLYEQMA ERSIVPNTVT QNIVLSGYGR AGKYEEMEKV LSGMLESTDS RPDIWTMNTI LSLFGNKGQV EMMERWYEKF
301: CSFGIEPETR TFNILISAYG KKRMYDKMSS VMEYMRKLSF PWTTSTYNNV IEAFSDIGDA KHMEYTFDQM RAEGVKGDTK TFCCLIRGYA NAGLFPKVIN
401: AVQLAGKLEI PENNSFFSSV IYACAKAEDL LEMERVFKRM KDKGFRPDDT TYTVMAEAYR KEGMTDKVYD LEQEKRMMSA SDSCDSQDKL ELMPT

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.