Factsheet for PGSC0003DMT400011734

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400016146
PGSC0003DMT400029374
PGSC0003DMT400035458
PGSC0003DMT400046911
PGSC0003DMT400050252
PGSC0003DMT400056953
PGSC0003DMT400060951
PGSC0003DMT400064306
PGSC0003DMT400083086
PGSC0003DMT400088401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT3G06430.1	PGSC0003DMT400035458	AT1G30860.1	21798944
AT3G06430.1	PGSC0003DMT400064306	AT2G23290.1	21798944
AT3G06430.1	PGSC0003DMT400088401	AT3G14180.1	21798944
AT3G06430.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT3G06430.1	PGSC0003DMT400016146	AT5G06710.1	21798944
AT3G06430.1	PGSC0003DMT400060951	AT5G06710.1	21798944
AT3G06430.1	PGSC0003DMT400046911	AT5G06780.1	21798944
AT3G06430.1	PGSC0003DMT400056953	AT5G56250.1	21798944
AT3G06430.1	PGSC0003DMT400050252	AT5G61380.1	21798944
AT3G06430.1	PGSC0003DMT400083086	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098990.1.1	Tomato	plastid	95.35	95.35
PGSC0003DMT400022191	Potato	plastid	74.95	74.05
VIT_05s0020g00690.t01	Wine grape	plastid	69.9	69.48
KRH02451	Soybean	plastid	65.66	66.6
KRH02371	Soybean	plastid	65.45	66.39
CDY24692	Canola	plastid	64.04	66.04
CDY05264	Canola	plastid	64.44	65.1
AT3G06430.1	Thale cress	plastid	63.84	65.02
Bra020748.1-P	Field mustard	plastid	64.44	64.97
GSMUA_Achr11P...	Banana	plastid	63.43	57.83
Os03t0309800-02	Rice	plastid	55.96	55.29
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	57.17	53.7
KRH37687	Soybean	plastid	52.32	53.4
TraesCS4D01G132900.3	Wheat	plastid	56.97	52.13
TraesCS4A01G178100.5	Wheat	plastid	56.97	52.13
EER97871	Sorghum	plastid	57.37	50.71
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	57.58	49.31
Zm00001d018693_P001	Maize	plastid	55.35	47.99
PGSC0003DMT400082022	Potato	plastid	35.96	36.48
PGSC0003DMT400008123	Potato	cytosol, plastid	31.92	34.42
PGSC0003DMT400033331	Potato	plastid	19.6	20.34
PGSC0003DMT400027006	Potato	cytosol, plastid	19.8	17.01
PGSC0003DMT400041148	Potato	plastid	17.37	15.04
PGSC0003DMT400060882	Potato	mitochondrion	14.34	13.05
PGSC0003DMT400066525	Potato	plastid	21.21	12.76
PGSC0003DMT400030453	Potato	mitochondrion	17.78	12.63
PGSC0003DMT400010473	Potato	plastid	20.4	12.0
PGSC0003DMT400063174	Potato	plastid	17.98	10.35
PGSC0003DMT400018827	Potato	cytosol	14.55	9.52

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102599390	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1A021	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
EnsemblPlantsGene:PGSC0003DMG400004604	PGSC:PGSC0003DMG400004604	EnsemblPlants:PGSC0003DMT400011734	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295545A	RefSeq:XP_006349961.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004604]

Coordinates

chr12:+:59799137..59802390

Molecular Weight (calculated)

56568.0 Da

IEP (calculated)

7.578

GRAVY (calculated)

-0.395

Length

495 amino acids

Sequence
(BLAST)

001: MANNSVSLSS SSSLFPSPLI HPAGGKFRRL FDFRRPLTAV ICCRASSSVA FPKKKHWKQG EYPGFTEQSG FKNSKRTPIK NIKKKLDRKS NATAWVSTIT
101: EALSEYIEKK QWAQALEVFE MLKEQPFYQS KESTYMKLLV LLGRCGQPGQ AQQLFDTMIE EGLEPTPEFY TALVGAYCRS NIIDKAFAIL QQMIELPYCQ
201: PNVYTYSILI KACVDASRFD LVDSLYEQMT ERSIVPNTVT QNIVLSGYGR AGKYEEMEKV LLGMLESTDS RPDIWTMNTI LSLFGNKGQV EMMERWYEKF
301: CSFGIEPETR TFNILISAYG KKRMYDKMSS VMEYMRKLSF PWTTSTYNNV IEAFSDIGDA KHMEYTFDQM RAEGAKGDTK TFCCLIRGYA NAGLFPKVIS
401: TVQLAGKLEI PENNSFFSSV IYACAKAEDL LEMERVFKRM KDKGFQPDDT TYTVMAEAYR KEGMTDKVYD LEQEKRMMSA SESSDSQEKL ELMPT

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.