Factsheet for PGSC0003DMT400008123

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g045780.2.1	Tomato	cytosol	96.73	96.52
VIT_13s0064g00400.t01	Wine grape	cytosol	67.32	62.42
KRH14115	Soybean	plastid	62.96	60.08
CDX78150	Canola	plastid	57.95	54.85
AT3G53170.2	Thale cress	plastid	58.39	53.71
CDX73576	Canola	plastid	57.3	52.71
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	56.86	52.3
OQU86802	Sorghum	cytosol	34.2	50.81
KXG40345	Sorghum	plastid	53.59	50.62
Os03t0115300-00	Rice	plastid	53.16	49.8
Zm00001d027349_P001	Maize	plastid	52.07	49.28
TraesCS4D01G353200.2	Wheat	cytosol	50.11	47.42
HORVU4Hr1G086600.3	Barley	plastid	50.98	47.18
TraesCS4B01G359900.1	Wheat	plastid	50.54	46.12
TraesCS5A01G528400.1	Wheat	plastid	51.2	43.84
PGSC0003DMT400082022	Potato	plastid	42.48	39.96
GSMUA_Achr11P...	Banana	endoplasmic reticulum	56.86	38.5
PGSC0003DMT400022191	Potato	plastid	36.38	33.33
PGSC0003DMT400011734	Potato	plastid	34.42	31.92
PGSC0003DMT400033331	Potato	plastid	22.0	21.17
PGSC0003DMT400027006	Potato	cytosol, plastid	22.66	18.06
PGSC0003DMT400060882	Potato	mitochondrion	18.95	15.99
PGSC0003DMT400041148	Potato	plastid	19.61	15.73
PGSC0003DMT400030453	Potato	mitochondrion	21.57	14.2
PGSC0003DMT400066525	Potato	plastid	22.88	12.76
PGSC0003DMT400010473	Potato	plastid	23.09	12.59
PGSC0003DMT400018827	Potato	cytosol	18.95	11.51
PGSC0003DMT400063174	Potato	plastid	21.13	11.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400008123	EnsemblPlantsGene:PGSC0003DMG400003133	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400003133	TIGRFAMs:TIGR00756	UniParc:UPI000295B225
UniProt:M0ZU41	MapMan:35.1	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003133]

Coordinates

chr8:+:23893655..23898398

Molecular Weight (calculated)

52136.6 Da

IEP (calculated)

7.740

GRAVY (calculated)

-0.088

Length

459 amino acids

Sequence
(BLAST)

001: MELQFAGASY LMKEGIKPRG LIIKSSSSTS QGLQKCSKKN LSRILRTEAA IRGIQRKANS EKYTNLWPKA VLEALDDAIR DNRWDSALKI FDLLRKQHWY
101: EPRCHTYAKL LVMLGKCKQP SKANLLFEIM LVDGLQPTVD VYTALVNAYG LSGLLDEALR TIDDMKSVSN CKPDVYTYSI LIKCCTKVRR FDMIEYILAE
201: MVYLGIECSS VTYNTIIDGY GKAKLFEQME SSLTDMIENE TAFPDVFTLN SVIGSYGSCG KLEKMEKWFE EFQVMGIKPD VMTFNILIKS YGRAGMYQKM
301: ESVLDFIRNR FYSPTVVTYN IIIETLGKAC LIKNMEQFFL QMKHEGVKPS SFTYCSLVSA YSRAGLMENV DSIMRQVENS DVVLDTPFFN CIISAYGQAG
401: DIERMVALFL EMKVRKCKPD YITFSTMIQA YNSQGMTEAA MDLKTKIITS CESNELISS

Best Arabidopsis Sequence Match ( AT3G53170.4 )
(BLAST)

001: MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL
101: FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST
201: VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR
301: FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI
401: QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS GENLDIL

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.