CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78150	Canola	plastid	93.39	96.08
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	90.18	90.18
AT3G53170.2	Thale cress	plastid	82.57	82.57
VIT_13s0064g00400.t01	Wine grape	cytosol	59.52	60.0
KRH14115	Soybean	plastid	56.71	58.84
PGSC0003DMT400008123	Potato	cytosol, plastid	52.71	57.3
Solyc08g045780.2.1	Tomato	cytosol	51.9	56.3
KXG40345	Sorghum	plastid	49.7	51.03
Zm00001d027349_P001	Maize	plastid	48.9	50.31
Os03t0115300-00	Rice	plastid	49.3	50.2
TraesCS4D01G353200.2	Wheat	cytosol	47.49	48.87
OQU86802	Sorghum	cytosol	29.86	48.22
HORVU4Hr1G086600.3	Barley	plastid	47.9	48.19
TraesCS4B01G359900.1	Wheat	plastid	46.89	46.52
TraesCS5A01G528400.1	Wheat	plastid	47.7	44.4
CDX85360	Canola	plastid	39.48	39.01
CDX86283	Canola	plastid	39.28	38.58
GSMUA_Achr11P...	Banana	endoplasmic reticulum	50.5	37.17
CDY24692	Canola	plastid	33.27	34.58
CDY05264	Canola	plastid	33.27	33.88
CDY41990	Canola	plastid	19.84	21.02
CDY42639	Canola	plastid	19.84	20.5
CDY06027	Canola	plastid	18.04	16.95
CDX71917	Canola	plastid	18.04	16.51
CDY31603	Canola	plastid	21.44	16.14
CDX71198	Canola	cytosol	18.24	16.08
CDX71562	Canola	mitochondrion, plastid	21.44	15.31
CDY31666	Canola	cytosol	18.84	15.09
CDY15384	Canola	cytosol	12.83	15.02
CDY64953	Canola	cytosol	8.62	14.78
CDX84260	Canola	cytosol, nucleus, plastid	18.84	14.62
CDX98345	Canola	cytosol	8.82	14.15
CDX74617	Canola	mitochondrion	9.42	13.39
CDY32056	Canola	plastid	20.44	12.61
CDY19091	Canola	cytosol	18.24	12.48
CDY56509	Canola	plastid	20.04	12.22
CDY29249	Canola	plastid	19.84	12.12
CDY10802	Canola	plastid	19.64	11.54
CDY56616	Canola	plastid	17.23	10.9
CDX73117	Canola	plastid	18.84	10.89
CDY45398	Canola	plastid	18.84	10.88
CDY23832	Canola	plastid	16.03	9.78
CDX79920	Canola	cytosol, plastid	15.23	9.3
CDY52317	Canola	cytosol	0.2	5.88

Protein Annotations

EnsemblPlants:CDX73576	EnsemblPlantsGene:GSBRNA2T00109127001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX73576	ProteinID:CDX73576.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EE38CD	MapMan:35.1	:	:	:

Description

BnaC08g24270D

Coordinates

chrLK031799:+:1380897..1382924

Molecular Weight (calculated)

56319.5 Da

IEP (calculated)

8.352

GRAVY (calculated)

-0.086

Length

499 amino acids

Sequence
(BLAST)

001: MALIQQPVQG SSSLCANEII QSSHCFSRLI QQLISLSPVL SRHVTSVSVM HTTCSTESPK ERKDRKSSGL ISTKHQVDPK RELSRILRTD AAVKSIERKV
101: NSEKYNTLWP KAVLEALDDA VKENRWQSAL KIFSLLRKQH WYEPRCKTYT KLFKLLGNCK QPEQASLLFE LLLSEGLKPT IDVYTSLISV YGKCSLLEKA
201: FATLEYMKSV SDCTPDVFTF TVLISCCCKL ARFDLVNRVL LEMSYLGVRC STVTYNTILD GYGKAGLFEE MENVLADMIE DGDSLPDVFT LNSIIGSYGN
301: GGNIRKMESW YNRFQLMGVE PDITTFNVLI LSFGKAGMYK KMSSVMDYME KRFFSPTVVT YNIVIETFGK AGRIEKMEDV FRKMKYRGVK PNSITYCSLV
401: DAYSKAGLVG KIDSVLRQVV NSDVVLDTVF FNCIINAYGE AGDLATMKEL YIQMEERKCK PDKITFATMV KTYAAHGIFD AVRELEKQMI STCESSGIL

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.