CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015889.1-P	Field mustard	plastid	99.54	99.54
CDX73117	Canola	plastid	96.76	96.87
AT1G74850.1	Thale cress	plastid	94.21	94.43
VIT_17s0000g07500.t01	Wine grape	plastid	72.57	72.15
KRH03384	Soybean	nucleus	69.56	69.97
KRH56998	Soybean	nucleus	69.21	69.7
PGSC0003DMT400063174	Potato	plastid	68.06	68.37
Solyc03g113630.2.1	Tomato	nucleus	67.48	67.79
GSMUA_Achr1P18290_001	Banana	cytosol	48.15	62.65
HORVU5Hr1G114630.1	Barley	mitochondrion	49.54	51.38
Os03t0824100-01	Rice	plastid	50.93	50.69
TraesCS5A01G486300.1	Wheat	plastid	50.12	49.83
TraesCS5D01G500300.1	Wheat	plastid	49.88	49.54
TraesCS5B01G500100.1	Wheat	plastid	49.88	49.03
OQU90703	Sorghum	plastid	50.23	48.38
Zm00001d022599_P002	Maize	plastid	50.0	48.32
CDX71198	Canola	cytosol	15.39	23.5
CDY19091	Canola	cytosol	19.44	23.05
CDY32056	Canola	plastid	20.25	21.63
CDY64953	Canola	cytosol	7.06	20.96
CDY15384	Canola	cytosol	10.19	20.66
CDY56509	Canola	plastid	19.44	20.54
CDY10802	Canola	plastid	20.14	20.49
CDX86283	Canola	plastid	12.04	20.47
CDX85360	Canola	plastid	11.92	20.4
CDY56616	Canola	plastid	18.52	20.28
CDY29249	Canola	plastid	19.1	20.2
CDY23832	Canola	plastid	18.98	20.05
CDX79920	Canola	cytosol, plastid	18.75	19.83
CDY41990	Canola	plastid	10.76	19.75
CDX78150	Canola	plastid	11.0	19.59
CDY42639	Canola	plastid	10.88	19.46
CDY31603	Canola	plastid	14.7	19.16
CDY31666	Canola	cytosol	13.77	19.1
CDX73576	Canola	plastid	10.88	18.84
CDY06027	Canola	plastid	11.46	18.64
CDX74617	Canola	mitochondrion	7.52	18.52
CDX71562	Canola	mitochondrion, plastid	14.93	18.45
CDX84260	Canola	cytosol, nucleus, plastid	13.66	18.35
CDX71917	Canola	plastid	11.46	18.17
CDY24692	Canola	plastid	9.95	17.92
CDY05264	Canola	plastid	9.84	17.35
CDX98345	Canola	cytosol	6.02	16.72
CDY52317	Canola	cytosol	0.12	5.88

Protein Annotations

Gene3D:1.25.40.10	MapMan:15.6.1.2.2.2	UniProt:A0A078I8A2	EnsemblPlants:CDY45398	ProteinID:CDY45398	ProteinID:CDY45398.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00081908001	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE1548	SEG:seg	:	:	:

Description

BnaA07g31780DBnaA07g31780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8A2]

Coordinates

chrLK032624:-:38448..42652

Molecular Weight (calculated)

96457.1 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.254

Length

864 amino acids

Sequence
(BLAST)

001: MNLAIPNPNS HHLSFLIHNS TFITNRRLFA NNPNRLTFLS GGKRPSSVAK INAKTKDLVL GNPSVSVEKG KYTYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVARSVFSYT ALINAYGRNG RYETSLELLE
201: RMKSEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDESEMVF RTMNDGGIVP DLTTYSHLVE TFGKLGRLEK
301: VCDLLNEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIDVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA KDVVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLFKE SEVILSRLVD SGIPRNRDTF NATIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSCARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLSVYGKT ERWDDANELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGIF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDLSDMLVK GQDIPQLAVV VSVRGQLEKS SAARESPITK AAFSFLQDNV SSSFSFTGWN GGRIMCQRSQ
801: LKQLLSTQEP TSEESQKSSL VALTNSPIFA AGTRTSTSSD TNNSSGNPSQ RRTRMKKELA GSPA

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.