Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06027 | Canola | plastid | 64.63 | 37.85 |
| CDX71917 | Canola | plastid | 63.99 | 36.51 |
| AT3G59040.2 | Thale cress | endoplasmic reticulum | 66.88 | 35.25 |
| KRH36131 | Soybean | plastid | 52.09 | 29.29 |
| KRG90623 | Soybean | nucleus | 52.73 | 29.18 |
| VIT_12s0028g01140.t01 | Wine grape | cytosol | 51.13 | 29.01 |
| PGSC0003DMT400041148 | Potato | plastid | 51.77 | 28.15 |
| Solyc07g043600.2.1 | Tomato | nucleus | 50.8 | 27.24 |
| Zm00001d024248_P001 | Maize | plastid | 50.48 | 26.17 |
| EES13486 | Sorghum | plastid | 49.52 | 25.58 |
| TraesCS3A01G523700.1 | Wheat | plastid | 48.23 | 24.67 |
| TraesCS3D01G529200.1 | Wheat | plastid | 47.91 | 24.39 |
| TraesCSU01G054500.1 | Wheat | cytosol, plastid | 47.91 | 24.39 |
| Os08t0191900-01 | Rice | plastid | 47.59 | 24.3 |
| HORVU3Hr1G114340.4 | Barley | mitochondrion | 46.62 | 22.87 |
| GSMUA_Achr8P07220_001 | Banana | cytosol | 49.52 | 14.15 |
| CDY64953 | Canola | cytosol | 10.61 | 11.34 |
| CDX85360 | Canola | plastid | 15.76 | 9.7 |
| CDX74617 | Canola | mitochondrion | 10.93 | 9.69 |
| CDX71198 | Canola | cytosol | 17.36 | 9.54 |
| CDX78150 | Canola | plastid | 14.47 | 9.28 |
| CDX86283 | Canola | plastid | 15.11 | 9.25 |
| CDY24692 | Canola | plastid | 14.15 | 9.17 |
| CDY05264 | Canola | plastid | 14.15 | 8.98 |
| CDX73576 | Canola | plastid | 14.15 | 8.82 |
| CDY31603 | Canola | plastid | 17.04 | 7.99 |
| CDY31666 | Canola | cytosol | 15.43 | 7.7 |
| CDX84260 | Canola | cytosol, nucleus, plastid | 15.76 | 7.62 |
| CDX71562 | Canola | mitochondrion, plastid | 16.72 | 7.44 |
| CDY41990 | Canola | plastid | 10.61 | 7.01 |
| CDY56509 | Canola | plastid | 18.33 | 6.97 |
| CDY29249 | Canola | plastid | 18.01 | 6.85 |
| CDY42639 | Canola | plastid | 10.61 | 6.83 |
| CDY32056 | Canola | plastid | 17.68 | 6.8 |
| CDY19091 | Canola | cytosol | 15.43 | 6.58 |
| CDY15384 | Canola | cytosol | 9.0 | 6.57 |
| CDY56616 | Canola | plastid | 15.43 | 6.08 |
| CDX73117 | Canola | plastid | 16.72 | 6.03 |
| CDY45398 | Canola | plastid | 16.72 | 6.02 |
| CDY10802 | Canola | plastid | 15.43 | 5.65 |
| CDY23832 | Canola | plastid | 13.5 | 5.13 |
| CDX79920 | Canola | cytosol, plastid | 13.18 | 5.02 |
| CDY52317 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX98345 | EnsemblPlantsGene:GSBRNA2T00105896001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF722 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:CDX98345 | ProteinID:CDX98345.1 | SEG:seg |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | UniParc:UPI0004EEB138 | MapMan:35.1 | : | : |
Description
BnaC06g17060D
Coordinates
chrLK031904:-:701618..702943
Molecular Weight (calculated)
35968.7 Da
IEP (calculated)
5.221
GRAVY (calculated)
-0.659
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MNETENNFSS HEILEWIRYQ NWKLQPELKG GGKCNNAEAI FRRMQLYLKT FVEGNKFKEA EKVFETLLDE KRSPLKPDQK MYHMMIYMHK KAGNYEKARK
101: VFASMAEKGV PQSTVTIAFE TYKEVSKIYD QHMEEQEERK KLYLRSMLLH NYVISVFTYG TMIKGYLKAN DLDKVMEVYE KMRFSGIKAN LTILTIIMDA
201: FGRCKDFGSA LSWYKEMESC GVTPDHKAKN VLLSLASSRD ELEEGKELNG FRDETTTILA GLYQSDDDVS SGEFEYEEEE DDGAGETVLY DKKQEGSSHY
301: VSSQRGELVG L
101: VFASMAEKGV PQSTVTIAFE TYKEVSKIYD QHMEEQEERK KLYLRSMLLH NYVISVFTYG TMIKGYLKAN DLDKVMEVYE KMRFSGIKAN LTILTIIMDA
201: FGRCKDFGSA LSWYKEMESC GVTPDHKAKN VLLSLASSRD ELEEGKELNG FRDETTTILA GLYQSDDDVS SGEFEYEEEE DDGAGETVLY DKKQEGSSHY
301: VSSQRGELVG L
001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.