Factsheet for PGSC0003DMT400041148

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g043600.2.1	Tomato	nucleus	97.2	95.86
VIT_12s0028g01140.t01	Wine grape	cytosol	66.96	69.89
CDY06027	Canola	plastid	64.86	69.87
CDX71917	Canola	plastid	65.21	68.44
KRH36131	Soybean	plastid	64.86	67.09
KRG90623	Soybean	nucleus	65.21	66.37
AT3G59040.2	Thale cress	endoplasmic reticulum	65.21	63.22
TraesCS3A01G523700.1	Wheat	plastid	63.81	60.03
Os08t0191900-01	Rice	plastid	63.81	59.93
EES13486	Sorghum	plastid	62.94	59.8
TraesCSU01G054500.1	Wheat	cytosol, plastid	63.81	59.74
TraesCS3D01G529200.1	Wheat	plastid	63.81	59.74
Zm00001d024248_P001	Maize	plastid	62.59	59.67
HORVU3Hr1G114340.4	Barley	mitochondrion	64.16	57.89
CDX98345	Canola	cytosol	28.15	51.77
GSMUA_Achr8P07220_001	Banana	cytosol	65.73	34.56
PGSC0003DMT400082022	Potato	plastid	18.18	21.31
PGSC0003DMT400008123	Potato	cytosol, plastid	15.73	19.61
PGSC0003DMT400027006	Potato	cytosol, plastid	18.88	18.75
PGSC0003DMT400011734	Potato	plastid	15.04	17.37
PGSC0003DMT400022191	Potato	plastid	15.21	17.37
PGSC0003DMT400033331	Potato	plastid	12.76	15.3
PGSC0003DMT400060882	Potato	mitochondrion	13.81	14.52
PGSC0003DMT400030453	Potato	mitochondrion	17.66	14.49
PGSC0003DMT400066525	Potato	plastid	19.58	13.61
PGSC0003DMT400010473	Potato	plastid	17.83	12.11
PGSC0003DMT400018827	Potato	cytosol	15.56	11.77
PGSC0003DMT400063174	Potato	plastid	17.66	11.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400041148	EnsemblPlantsGene:PGSC0003DMG400015924	EntrezGene:102605894	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF722	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400015924	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI00029538A3	UniProt:M1BAZ6	MapMan:16.12.4.6	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015924]

Coordinates

chr7:+:42107970..42114724

Molecular Weight (calculated)

64929.6 Da

IEP (calculated)

5.527

GRAVY (calculated)

-0.497

Length

572 amino acids

Sequence
(BLAST)

001: MMVFLKPFIS PSSSSLWSKS NSGENSLNTN VKICKRAEVV CQGMLTPRKF MQKRRKVEVF KSTEDEADQK NWRKMMNEIE EAGSAVSVLR TQRDKNQALP
101: KNLVLGSLVR FKQLKKWNLV SEILEWLRTQ HWWDFNEMDF LMLITAYGKQ GDFSKAERIL GYMNKKGYPA NVISHTALME AYGKGGQYAK AEAIFRRMQT
201: SGPEPSAITY QIILKIFVEG DKFNEAQEVF EALMDMDAPP LKPDQKMFHM MIYMYKKAGK YEKARHLFSL MAERGIPQNT VTYNSLMSFE TNYKEVANIY
301: DQMQRAGLRP DVVSYALLIS AYGKARREEE ALAVFEEMLD AGVRPTQKSY NILLDAFAIS GMVEQARTVF KSMRRDRCSP DLCSYTTMLS AYINASDMEG
401: AEKFFRRIKQ DGLEPNVVTY GTLIKGYAKT NDLEKMMEKY EDMRVHGIKA NQTIFTTIMD AYGRNKDFGS AVAWFNEMAS SGVSPDQKAK NILLSLAKTS
501: EEQMEAKQIT GCANELIVNS IPSDINDNDE NEYDDDDGSG GDDDDDIDEK ESILSGEKLD KLIISGSAAS QT

Best Arabidopsis Sequence Match ( AT3G59040.1 )
(BLAST)

001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.