Factsheet for PGSC0003DMT400063174

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113630.2.1	Tomato	nucleus	98.14	98.14
VIT_17s0000g07500.t01	Wine grape	plastid	75.47	74.68
KRH56998	Soybean	nucleus	69.77	69.93
KRH03384	Soybean	nucleus	69.65	69.73
AT1G74850.1	Thale cress	plastid	68.37	68.21
Bra015889.1-P	Field mustard	plastid	68.49	68.17
CDY45398	Canola	plastid	68.37	68.06
CDX73117	Canola	plastid	68.14	67.9
GSMUA_Achr1P18290_001	Banana	cytosol	50.0	64.76
HORVU5Hr1G114630.1	Barley	mitochondrion	48.26	49.82
Os03t0824100-01	Rice	plastid	49.65	49.19
TraesCS5A01G486300.1	Wheat	plastid	48.95	48.45
TraesCS5D01G500300.1	Wheat	plastid	48.95	48.39
TraesCS5B01G500100.1	Wheat	plastid	48.72	47.67
OQU90703	Sorghum	plastid	49.3	47.27
Zm00001d022599_P002	Maize	plastid	48.72	46.87
PGSC0003DMT400018827	Potato	cytosol	21.28	24.21
PGSC0003DMT400027006	Potato	cytosol, plastid	14.3	21.35
PGSC0003DMT400066525	Potato	plastid	20.23	21.14
PGSC0003DMT400008123	Potato	cytosol, plastid	11.28	21.13
PGSC0003DMT400082022	Potato	plastid	11.4	20.08
PGSC0003DMT400010473	Potato	plastid	19.42	19.83
PGSC0003DMT400033331	Potato	plastid	10.81	19.5
PGSC0003DMT400030453	Potato	mitochondrion	15.35	18.94
PGSC0003DMT400011734	Potato	plastid	10.35	17.98
PGSC0003DMT400022191	Potato	plastid	10.35	17.76
PGSC0003DMT400041148	Potato	plastid	11.74	17.66
PGSC0003DMT400060882	Potato	mitochondrion	10.47	16.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102602805	MapMan:15.6.1.2.2.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508
GO:GO:0009536	GO:GO:0009987	GO:GO:0042793	GO:GO:0045893	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	UniProt:M1CA70	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812
EnsemblPlantsGene:PGSC0003DMG400024573	PGSC:PGSC0003DMG400024573	EnsemblPlants:PGSC0003DMT400063174	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF81901	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002965C0B	RefSeq:XP_006344988.1	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400024573]

Coordinates

chr3:-:53518233..53523994

Molecular Weight (calculated)

97121.4 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.255

Length

860 amino acids

Sequence
(BLAST)

001: MSLSYNTFSQ VLTPVPPSHR FLFPTKIPNY YKLPGFHRRL LLTVAVRAKP KDLILGNPTV TVEKGKYSYD VETLINKLSS LPPRGSIARC LDTFKNKLSL
101: SDFSLVFKEF AARGDWQRSL RLFKYMQRQI WCKPNEHIYT LMIGILGREG LLDKAFEIFD EMSTHSVART VFSYTAIINA YGRNGQYETS LQLLEKMKQE
201: NIVPSILTYN TVINSCARGG YEWEGLLGLF AEMRHEGIQP DLVTYNTLLS ACSSRELEDE AEMVFRTMNE AGVLPDVTTY SYLVETFGKL GKLEKVSELL
301: MEMEAGGTSP EVTSYNVLLE AYAHLGSMKE AMDVFRQMQA AGCVANAETY SILLNLYGKN GRYDQVRELF LEMKTSNTEP DADTYNILIQ VFGEGGYFKE
401: VVTLFHDMVE EKVEPNMETY EGLIYACGKG GLHEDAKRIL LHMNGQGLVP SSKVYTAVIE AYGQAALYEE AVVAFNTMNE VGSRPMVETF NSLIHTFAKG
501: GLYKESEAIW FRMGEVGVPR NRDSFNGLIE GYRQGGQFEE AIKAYVEMEK ARCDPDERTL EAVLSVYCFA GLVDESEEQF QEIKSLGIQP SIICCCMMLA
601: IYAKSERWDM ARELLNDVMT NKTSDMHQII GRMIHGDFDD ENNWQMVEYV FDKLKSEGCG LSMRFYNTLI EALWWLGQKE RAARVLNEAT KRGLFPELFR
701: RNKLVWSVDV HRMWPGGACT AISVWLNDME ELFHKGEELP QLASIVVVRG QTEKSSVTRD LPVAKAAYSF LKDTVSSSFS FPGWNKGRIV CQRTQLKRTF
801: SSAEPSAEAS KGDRLIPLSN SPISLLGTQT SMSDAKRSES ANADSERSTR PDPELMASSV

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.