Factsheet for PGSC0003DMT400022191

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400016146
PGSC0003DMT400029374
PGSC0003DMT400035458
PGSC0003DMT400046911
PGSC0003DMT400050252
PGSC0003DMT400056953
PGSC0003DMT400060951
PGSC0003DMT400064306
PGSC0003DMT400083086
PGSC0003DMT400088401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT3G06430.1	PGSC0003DMT400035458	AT1G30860.1	21798944
AT3G06430.1	PGSC0003DMT400064306	AT2G23290.1	21798944
AT3G06430.1	PGSC0003DMT400088401	AT3G14180.1	21798944
AT3G06430.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT3G06430.1	PGSC0003DMT400016146	AT5G06710.1	21798944
AT3G06430.1	PGSC0003DMT400060951	AT5G06710.1	21798944
AT3G06430.1	PGSC0003DMT400046911	AT5G06780.1	21798944
AT3G06430.1	PGSC0003DMT400056953	AT5G56250.1	21798944
AT3G06430.1	PGSC0003DMT400050252	AT5G61380.1	21798944
AT3G06430.1	PGSC0003DMT400083086	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g057200.2.1	Tomato	plastid	86.23	91.91
PGSC0003DMT400011734	Potato	plastid	74.05	74.95
VIT_05s0020g00690.t01	Wine grape	plastid	67.66	68.07
CDY24692	Canola	plastid	62.08	64.79
KRH02451	Soybean	plastid	62.48	64.14
Bra020748.1-P	Field mustard	plastid	62.48	63.75
KRH02371	Soybean	plastid	62.08	63.73
CDY05264	Canola	plastid	62.28	63.67
AT3G06430.1	Thale cress	plastid	61.08	62.96
GSMUA_Achr11P...	Banana	plastid	60.88	56.17
Os03t0309800-02	Rice	plastid	55.29	55.29
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	55.09	52.37
KRH37687	Soybean	plastid	50.5	52.16
TraesCS4A01G178100.5	Wheat	plastid	54.89	50.83
TraesCS4D01G132900.3	Wheat	plastid	54.69	50.65
EER97871	Sorghum	plastid	55.09	49.29
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	55.89	48.44
Zm00001d018693_P001	Maize	plastid	53.69	47.11
PGSC0003DMT400008123	Potato	cytosol, plastid	33.33	36.38
PGSC0003DMT400082022	Potato	plastid	35.33	36.27
PGSC0003DMT400033331	Potato	plastid	19.16	20.13
PGSC0003DMT400027006	Potato	cytosol, plastid	19.96	17.36
PGSC0003DMT400041148	Potato	plastid	17.37	15.21
PGSC0003DMT400066525	Potato	plastid	22.95	13.97
PGSC0003DMT400060882	Potato	mitochondrion	14.97	13.79
PGSC0003DMT400030453	Potato	mitochondrion	18.16	13.06
PGSC0003DMT400010473	Potato	plastid	21.36	12.71
PGSC0003DMT400063174	Potato	plastid	17.76	10.35
PGSC0003DMT400018827	Potato	cytosol	14.97	9.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400022191	EnsemblPlantsGene:PGSC0003DMG400008611	EntrezGene:102581788	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF301	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400008611	RefSeq:XP_006337965.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000294B649	UniProt:M1AGC8	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008611]

Coordinates

chr1:+:32952547..32954957

Molecular Weight (calculated)

56733.7 Da

IEP (calculated)

7.855

GRAVY (calculated)

-0.304

Length

501 amino acids

Sequence
(BLAST)

001: MTRTSFTLSS SSSLIPSPTS IGGRRRIITG AGAGVGLLCC AVAATTSSSR IAFEKKKQWK ESEYPGFSEV SVSHLNNKKG RGTPINKKVH RKNTANPWVN
101: TVPEALSDCI DKKQWQQALQ VFEMLKKQPF YQPKEGTYMR LLVLLGRCGQ PGQAQQLFDS MIEEGLEPTS ELYTALIGAY CRSNILDKAF ALLHAMIDLP
201: HCQPDVYTYS ILIKACVDAG RFDLVELLYE QMVDRSIVPN TVTQNIVLSG YGRAGKYAEM EKVLLGMLES ADSKPDVWTM NTILSIFGNK GLIEMMERWY
301: EKIRNFGIEP ETRTFNILIG AYGKKKMYDK MSSVMEYMRK LSFLWTTSTY NNVIEAFSDA GEAKHMEYTF DQMRAEGMKA DTKTFCCLIR GYANAGLFHK
401: VINTVQLAGK LEIPENTSLF NSVIYACAKA EDVMEMERVF KRMKDKQCRP DFMTYSTMIN AYQKEGMTDK VYDLEQEKLM MVAIHSNDSH NDEEKLELLP
501: T

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.