CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95402
KRH03510
KRH06239
KRH12155
KRH13873
KRH23958
KRH28419
KRH37161
KRH38083
KRH38126
KRH39841
KRH43419
KRH47662
KRH54582
KRH56889
KRH57983
KRH63298
KRH67080
KRH71831
KRH71929
KRH77058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	KRH12155	AT1G30860.1	21798944
AT3G06430.1	KRH37161	AT1G30860.1	21798944
AT3G06430.1	KRH28419	AT2G23290.1	21798944
AT3G06430.1	KRH57983	AT2G23290.1	21798944
AT3G06430.1	KRH77058	AT2G23290.1	21798944
AT3G06430.1	KRH06239	AT3G14180.1	21798944
AT3G06430.1	KRH47662	AT3G14180.1	21798944
AT3G06430.1	KRH23958	AT4G25200.1	21798944
AT3G06430.1	KRH39841	AT4G25200.1	21798944
AT3G06430.1	KRG95402	AT5G06710.1	21798944
AT3G06430.1	KRH13873	AT5G06710.1	21798944
AT3G06430.1	KRH38083	AT5G06710.1	21798944
AT3G06430.1	KRH43419	AT5G06710.1	21798944
AT3G06430.1	KRH67080	AT5G06710.1	21798944
AT3G06430.1	KRH71831	AT5G06710.1	21798944
AT3G06430.1	KRH38126	AT5G06780.1	21798944
AT3G06430.1	KRH71929	AT5G06780.1	21798944
AT3G06430.1	KRH03510	AT5G61380.1	21798944
AT3G06430.1	KRH54582	AT5G61380.1	21798944
AT3G06430.1	KRH56889	AT5G61380.1	21798944
AT3G06430.1	KRH63298	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02371	Soybean	plastid	97.95	97.95
VIT_05s0020g00690.t01	Wine grape	plastid	73.16	71.69
AT3G06430.1	Thale cress	plastid	70.7	70.99
CDY24692	Canola	plastid	69.67	70.83
CDY05264	Canola	plastid	70.49	70.2
Bra020748.1-P	Field mustard	plastid	69.88	69.45
Solyc12g098990.1.1	Tomato	plastid	66.6	65.66
PGSC0003DMT400011734	Potato	plastid	66.6	65.66
PGSC0003DMT400022191	Potato	plastid	64.14	62.48
Solyc01g057200.2.1	Tomato	plastid	59.84	62.13
KRH37687	Soybean	plastid	61.27	61.65
GSMUA_Achr11P...	Banana	plastid	66.19	59.48
Os03t0309800-02	Rice	plastid	61.07	59.48
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	59.63	55.22
TraesCS4D01G132900.3	Wheat	plastid	60.45	54.53
TraesCS4A01G178100.5	Wheat	plastid	60.25	54.34
EER97871	Sorghum	plastid	61.48	53.57
Zm00001d018693_P001	Maize	plastid	60.04	51.31
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	60.25	50.87
KRH46714	Soybean	plastid	38.93	36.89
KRH14115	Soybean	plastid	34.63	35.14
KRH59429	Soybean	plastid	21.72	21.07
KRH43291	Soybean	plastid	21.72	20.15
KRH57931	Soybean	cytosol	4.1	18.69
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	20.49	16.0
KRH27571	Soybean	plastid	16.8	15.19
KRH27783	Soybean	cytosol, plastid	16.19	15.13
KRH77730	Soybean	plastid	15.98	14.91
KRH60945	Soybean	plastid	20.49	14.66
KRH36131	Soybean	plastid	16.6	14.65
KRG91073	Soybean	plastid	23.77	14.61
KRG90623	Soybean	nucleus	16.8	14.59
KRH51622	Soybean	cytosol, plastid	20.08	14.08
KRH12254	Soybean	plastid	22.95	13.51
KRH37281	Soybean	plastid	21.93	12.89
KRH03384	Soybean	nucleus	20.29	11.53
KRH56998	Soybean	nucleus	19.88	11.31
KRH66918	Soybean	cytosol	16.19	9.44
KRH45156	Soybean	plastid	15.16	8.43
KRH01436	Soybean	plastid	14.75	8.23
KRG95241	Soybean	plastid	11.48	8.22

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100786610	MapMan:35.1	EMBL:ACUP02010305	EnsemblPlantsGene:GLYMA_17G039500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	UniProt:I1MRX2	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH02451
ProteinID:KRH02451	ProteinID:KRH02451.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233F3B4
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:2934677..2937027

Molecular Weight (calculated)

56328.4 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.401

Length

488 amino acids

Sequence
(BLAST)

001: MASMSLSFCS CIVPSRIPHD KSNKTHSHHQ PTFPLIRFGI SAPAVKKRHW KKGEFPATSQ PSFPNDTRRK TPLKNLKKKF DKKNDAKAWV NTVTESLSER
101: IHNKHWLQAL QVFDMLREQT FYQPKEGTYM KLIVLLGKSG QPHRAHQLFT TMIEEGLEPT PELYTALLAA YCRSNMIDEA FSVLNEMKKL PRCQPDVFTY
201: STLIKVCVDA FKFDLVELLY EEMAERSIMP NTVTQNIVLG GYGKAGMFDQ MEKVLSSMLL STTCKPDVWT MNTIISVFGN MGQIDMMEKW YEKFRYFGIE
301: PETRTFNILI GAYGKKRMYD KMSSVMEYMR KLQFPWTTST YNNVIEAFAD AGDAKHMECT FDQMRAEGMK ADTKTLCCLI NGYANAGLFH KVISSVRLAG
401: KLEIPENITF YNAVLSACAK AEDLMEMERV FKRMKDSQCQ PDDTTYTIMI EAYRKEGMND KIYYLEQEKQ TMMTDDKKVS QFENEILI

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.