CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g01970.t01	Wine grape	cytosol	69.76	74.91
PGSC0003DMT400027006	Potato	cytosol, plastid	65.6	71.18
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	67.2	67.42
GSMUA_Achr7P03530_001	Banana	cytosol	60.16	63.84
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	60.48	61.66
Os02t0170000-02	Rice	cytosol	45.12	60.13
CDY31666	Canola	cytosol	59.04	59.23
OQU84443	Sorghum	cytosol	56.64	58.51
CDX84260	Canola	cytosol, nucleus, plastid	60.16	58.48
Zm00001d015377_P003	Maize	plastid	54.88	57.45
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	51.52	49.92
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	57.92	47.63
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	41.6	43.84
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	42.08	41.95
TraesCS6A01G163600.2	Wheat	nucleus	41.92	41.52
KRH57931	Soybean	cytosol	4.32	25.23
KRH37687	Soybean	plastid	16.8	21.65
KRH02451	Soybean	plastid	16.0	20.49
KRH02371	Soybean	plastid	15.84	20.29
KRH14115	Soybean	plastid	15.04	19.54
KRH59429	Soybean	plastid	15.52	19.28
KRH27783	Soybean	cytosol, plastid	15.68	18.77
KRH36131	Soybean	plastid	16.48	18.63
KRH46714	Soybean	plastid	15.2	18.45
KRH43291	Soybean	plastid	15.36	18.25
KRG90623	Soybean	nucleus	16.32	18.15
KRH77730	Soybean	plastid	15.04	17.97
KRH27571	Soybean	plastid	15.52	17.96
KRG91073	Soybean	plastid	22.08	17.38
KRH60945	Soybean	plastid	18.72	17.16
KRH51622	Soybean	cytosol, plastid	19.04	17.1
KRH12254	Soybean	plastid	19.84	14.96
KRH56998	Soybean	nucleus	20.0	14.57
KRH37281	Soybean	plastid	19.04	14.34
KRH03384	Soybean	nucleus	19.68	14.32
KRH66918	Soybean	cytosol	16.16	12.07
KRH45156	Soybean	plastid	15.52	11.05
KRH01436	Soybean	plastid	15.04	10.74
KRG95241	Soybean	plastid	11.36	10.43

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	UniProt:A0A0R0EL25	EMBL:ACUP02012633	EnsemblPlantsGene:GLYMA_20G109800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRG90712	ProteinID:KRG90712
ProteinID:KRG90712.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF421	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006ED69CC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:+:35211945..35218189

Molecular Weight (calculated)

70639.8 Da

IEP (calculated)

7.279

GRAVY (calculated)

-0.160

Length

625 amino acids

Sequence
(BLAST)

001: MARNTTCNLN AVPFHAVDPR IGISSPIERR NKEPLLQQLI FLLLLVCAFW LNSICTLSHT LIEPRACMND SEWKANDSNS VALEKFKRDS VYIDKNGRLR
101: NFNHKKVSRK KCGSLRGRGW KYGSGFVDGI FPVLSPTAQQ ILDYVEKGVE SESIWGSLDM LPPTLDAWDD IFTVAVQLRM RKQWDSIISI CRWILLRSSF
201: KPDVICYNLL IEAFGQKLLY KEAESTYLQL LEARCIPTED TYALLIKAYC ISGLLEKAEA VFAEMRNYGL PSSAVVYNAY INGLMKGGNS DKAEEIFKRM
301: KKDACKPTTE TYTMLINLYG KAGKSFMALK LFHEMMSHDC KPNICTYTAL VNAFAREGLC EKAEEVFEQM QEAGLEPDVY AYNALMEAYS RAGYPYGAAE
401: IFSLMQHMGC EPDRASYNIL VDAYGKAGFQ DDAEAVFKDM KRVGITPTMK SHMVLLSAYS KMGSVNKCEE ILNQMCKSGL KLDTYVLNSM LNLYGRLGQF
501: GKMEEVLRVM EKGSYVADIS TYNILINRYG QAGFIERMED LFQLLPSKGL KPDVVTWTSR IGAYSKKKLY LKCLEIFEEM IDDGCYPDGG TAKVLLAACS
601: NEDQTEQVTT VIRTMHKDMK TVLPV

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.