Factsheet for GSMUA_Achr7P03530_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g01970.t01	Wine grape	cytosol	68.76	69.59
Os02t0170000-02	Rice	cytosol	52.97	66.52
PGSC0003DMT400027006	Potato	cytosol, plastid	64.18	65.62
OQU84443	Sorghum	cytosol	64.01	62.31
Zm00001d015377_P003	Maize	plastid	62.31	61.47
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	64.86	61.32
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	63.84	60.16
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	61.46	59.05
CDY31666	Canola	cytosol	61.12	57.78
CDX84260	Canola	cytosol, nucleus, plastid	61.63	56.45
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	58.4	53.33
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	60.1	46.58
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	44.31	44.01
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	46.35	43.54
TraesCS6A01G163600.2	Wheat	nucleus	45.16	42.16
GSMUA_Achr1P10690_001	Banana	cytosol	12.22	21.75
GSMUA_Achr1P15160_001	Banana	plastid	17.15	20.57
GSMUA_Achr6P16830_001	Banana	cytosol	18.85	19.75
GSMUA_Achr11P...	Banana	plastid	15.28	16.57
GSMUA_Achr1P18290_001	Banana	cytosol	18.51	16.42
GSMUA_Achr9P12090_001	Banana	mitochondrion	18.85	16.13
GSMUA_Achr5P22880_001	Banana	plastid	13.92	16.08
GSMUA_Achr2P04910_001	Banana	plastid	20.71	14.65
GSMUA_Achr2P02090_001	Banana	cytosol	15.45	14.0
GSMUA_Achr11P...	Banana	endoplasmic reticulum	15.79	13.72
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	14.6	10.26
GSMUA_Achr8P07220_001	Banana	cytosol	17.66	9.56

Protein Annotations

EnsemblPlants:GSMUA_Achr7P03530_001	EnsemblPlants:GSMUA_Achr7T03530_001	EnsemblPlantsGene:GSMUA_Achr7G03530_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF421	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0002967329	UniProt:M0TEE3	MapMan:1.1.8.1.6.1	:	:

Description

Pentatricopeptide repeat-containing protein At2g35130 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03530_001]

Coordinates

chr7:+:2792546..2795984

Molecular Weight (calculated)

66683.6 Da

IEP (calculated)

8.087

GRAVY (calculated)

-0.284

Length

589 amino acids

Sequence
(BLAST)

001: MICFLGTLSC RFTIEAVLNG PFPRSRFSVS GSERTLRQRG KDPSITLGEE RKQNIFLDKR GKWRISNPKK LSRKKGGSLR GRGWKYGSGF VDGVFPVLSP
101: MAQQILKFVQ RESDAAKIWA SLDTLPPTHN LWDDLISISV QLRLNKHWDP IISVCEWILY KSSFHPDVLC YNLLIDAYGQ KLQHKKAESV YLQLLEAHCI
201: PTEDTYALLL RAYCTCGLLE KCEAVLTEMR KNGTPPGAVV YNAYMDGLLK GRNTVKAVEI FRRMKSDQCR PSTDTYTMMI NLYGKANQSA TALKVFDEMK
301: TEKCKPNICT YTALVNAFAR DGLCEKAEEI FEELQEAGHE PDVYAYNALM EAYSRAGFPF GSYEIFTLMQ HMGCEPDTAS YNIMVDAFGR AGLHEEAEAV
401: FEELKQQGMT PTMKSHMLLL SAYSKAGNIP KCEFIMNQMH KSGLKPDTFA LNSMLNAYGR VGRFEKMEEV LTAMENSRLE GDISTYNILI NIYGRAGFLS
501: RMEELFRSLV SRGLKADVVT WTSKMSAYAR KKQYKRCLEI FEEMIDAGCY PDGGTAKVLL ASCTTDEQIE QVTTVIRSMH KEARNVFDI

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.