Factsheet for GSMUA_Achr9P12090_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G043170.1	Barley	mitochondrion	61.92	64.45
TraesCS2B01G238300.1	Wheat	plastid	62.65	64.42
EER99505	Sorghum	plastid	62.35	64.22
Zm00001d021716_P001	Maize	plastid	61.34	63.17
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	62.65	62.01
Os07t0548300-01	Rice	plastid	55.67	59.38
CDY31603	Canola	plastid	56.69	58.82
PGSC0003DMT400030453	Potato	mitochondrion	59.45	58.68
Solyc08g045850.2.1	Tomato	nucleus	59.59	58.66
KRH51622	Soybean	cytosol, plastid	59.16	58.48
AT5G42310.1	Thale cress	plastid	59.45	57.69
Bra017881.1-P	Field mustard	plastid	58.58	57.57
CDX71562	Canola	mitochondrion, plastid	58.43	57.51
KRH60945	Soybean	plastid	55.67	56.16
GSMUA_Achr1P10690_001	Banana	cytosol	20.49	42.6
GSMUA_Achr6P16830_001	Banana	cytosol	19.33	23.67
GSMUA_Achr1P15160_001	Banana	plastid	14.24	19.96
GSMUA_Achr2P04910_001	Banana	plastid	23.4	19.33
GSMUA_Achr5P22880_001	Banana	plastid	14.24	19.22
GSMUA_Achr7P03530_001	Banana	cytosol	16.13	18.85
GSMUA_Achr2P02090_001	Banana	cytosol	16.72	17.69
GSMUA_Achr11P...	Banana	plastid	13.23	16.76
GSMUA_Achr1P18290_001	Banana	cytosol	14.97	15.51
GSMUA_Achr11P...	Banana	endoplasmic reticulum	14.97	15.19
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	16.28	13.37
GSMUA_Achr8P07220_001	Banana	cytosol	18.6	11.76

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003727
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009658	GO:GO:0009987	GO:GO:0010239	GO:GO:0016020	GO:GO:0016043
GO:GO:0042644	GO:GO:0042651	EnsemblPlantsGene:GSMUA_Achr9G12090_001	EnsemblPlants:GSMUA_Achr9P12090_001	EnsemblPlants:GSMUA_Achr9T12090_001	InterPro:IPR002885
InterPro:IPR011990	UniProt:M0TZL8	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF788	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296A46F	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr9G12090_001]

Coordinates

chr9:+:7859502..7865358

Molecular Weight (calculated)

75939.3 Da

IEP (calculated)

7.360

GRAVY (calculated)

-0.137

Length

688 amino acids

Sequence
(BLAST)

001: MLLVPHLLPP GAARLVSPRP RHYVHLPDPV TVAASAAPST SSAAAATYDS VLASLNSRRY DFSPLLDFIS SPSASAQGPG GAGKESAPPT SLDPEELRLA
101: ETYRAVPAHV WHTLLKNLAA SPDTLPSAAA LVPWLERHRL CFSSDLLYSI LIHALGRHRR LHHALLLSSS SPAPSPLTLN ALISASALNG RPGLALQLLT
201: LLRRHGFLSD HPNYTLILQS LVRSPDPPDP NLLETLLFDL LSTSLEPDAR LLSDFVAAFA HAGDPDRALS LVSAAQAQGL TPKSSAVVAL LSALGAAGRV
301: PEAEAVFLEF HSSGLQPRTR AYNALLKGYV KIGALKDAEL IFEDMERCGV SPDEGTYSLL IDAYTNAGRW ESARILIKEM EANDVQPNSY VFSRILASLR
401: DKGDWQKSFA ILREMRSNGV QPDRHFYNVM IDTFGKYNCL HHAMDVFDRM RLDGITPDEI TWNTLIDAHC KAGRHDRAME LFKQMQQSGC IPCATTYNIM
501: INSLGEQEKW EELKEMFEKM KGQGLLPNVV TYTTLVDVYG KSGRFKEAIE FLEAMKASGM KPSPTMYHAL VNAYAQRGLS EQAINAFRVM RADGIKPTVL
601: VLNSLINAFG EDRRDNEAFS VLQYMKENDL KPDVVTYTTL MKALVRVEKF EKVPAVYEEM ISSGCTPDRK ARAMLRSALR YMKQAHTW

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.