Factsheet for GSMUA_Achr2P02090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0562300-01	Rice	cytosol	33.85	71.9
CDY15384	Canola	cytosol	36.62	55.87
Zm00001d030624_P001	Maize	plastid	74.31	55.52
EES16159	Sorghum	plastid	74.46	55.5
TraesCS5D01G097800.1	Wheat	plastid	72.77	55.26
TraesCS5A01G085800.1	Wheat	plastid	72.31	54.78
TraesCS5B01G091600.1	Wheat	plastid	71.85	54.43
Bra018247.1-P	Field mustard	nucleus	24.77	53.14
PGSC0003DMT400018827	Potato	cytosol	56.0	48.15
CDY19091	Canola	cytosol	53.23	47.46
Bra019526.1-P	Field mustard	cytosol	19.23	47.35
VIT_07s0005g01660.t01	Wine grape	plastid	60.31	45.21
Solyc06g009520.2.1	Tomato	nucleus, plastid	55.85	43.16
HORVU5Hr1G022350.1	Barley	plastid	33.69	42.61
CDY10802	Canola	plastid	54.77	41.93
CDY56616	Canola	plastid	50.46	41.57
AT2G31400.1	Thale cress	plastid	56.62	40.09
KRH45156	Soybean	plastid	49.38	36.56
KRH01436	Soybean	plastid	48.92	36.34
Bra021733.1-P	Field mustard	cytosol	55.38	32.79
Bra018246.1-P	Field mustard	plastid	24.46	32.19
GSMUA_Achr1P18290_001	Banana	cytosol	23.54	23.04
GSMUA_Achr6P16830_001	Banana	cytosol	19.38	22.42
GSMUA_Achr1P10690_001	Banana	cytosol	10.15	19.94
GSMUA_Achr1P15160_001	Banana	plastid	13.38	17.72
GSMUA_Achr9P12090_001	Banana	mitochondrion	17.69	16.72
GSMUA_Achr7P03530_001	Banana	cytosol	14.0	15.45
GSMUA_Achr2P04910_001	Banana	plastid	19.69	15.37
GSMUA_Achr11P...	Banana	plastid	12.77	15.29
GSMUA_Achr5P22880_001	Banana	plastid	11.38	14.51
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	18.62	14.44
GSMUA_Achr11P...	Banana	endoplasmic reticulum	13.54	12.98
GSMUA_Achr8P07220_001	Banana	cytosol	14.31	8.55

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.1370.110	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0010019	GO:GO:0031930	EnsemblPlantsGene:GSMUA_Achr2G02090_001	EnsemblPlants:GSMUA_Achr2P02090_001	EnsemblPlants:GSMUA_Achr2T02090_001	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	UniProt:M0S4F0	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002964610

Description

Putative Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G02090_001]

Coordinates

chr2:-:7962699..7966303

Molecular Weight (calculated)

71868.2 Da

IEP (calculated)

6.562

GRAVY (calculated)

0.089

Length

650 amino acids

Sequence
(BLAST)

001: MGCPDLARKV FDVGLSSGYA NTIYAHSALI SAYARSGLAM KAMDVLEMMK AAGLKPTTIS YNAVIDACGK GGVDLQLTLG FFREMLHNGL FPDRKTFNSL
101: LAACSRAGHL EDARMVFDEM IHLGIGQDIY TYNTFIDAIC KCGNMELALQ VTLDMPMNSV QPNVVTYSTL MDGYSKLEQF DEALNLYEKM KALKIGLDRV
201: CYNTLLSIYV KTGRYEDIVR VCNEMDVTGV DKDTVTYNCL INGHGKQGRF DIVGYLIQEM RDRGVSPSVL TYSTLIDIYS KAGMYGDAAN VFLEFKESGL
301: KADVVLYSSF IDTLAKNGLV DCAVWLLDEM TRMGIEPNVV TYNTIIDAFG KPRIVVEDGG VGNELAGVEG SGGQIVGAFG QLAKGIGRAV VEDSRRRSEE
401: LLCILGLFQK MIQQGVRPNV VTFSAILNAC SRCNSFEDAS LLLEQLRLFD NFVYGVAHGL LMGSREAWVQ AQSLFDELRR MDPPTSSAFY NALTDMLWHF
501: GQRRGAQQVV LEGVHRHVWE NTWTKYSLDL HLMSVGAAQA MVHAWLLSMH SIVFEGRKLP EYVSILTGWG KHSKVAGAST LRRVIETLLN SMGAPFHLEK
601: FNVGRFVSAG ATVTAWLRES GTVNILLLHD KRVQSANPLN LIPILQVLRL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.