Factsheet for GSMUA_Achr5P22880_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g01360.t01	Wine grape	plastid	63.73	66.46
KXG30749	Sorghum	plastid	64.12	65.66
PGSC0003DMT400033331	Potato	plastid	60.0	64.15
Zm00001d052240_P001	Maize	plastid	62.75	64.13
Solyc04g054270.2.1	Tomato	plastid	60.0	64.02
CDY41990	Canola	plastid	58.04	62.84
CDY42639	Canola	plastid	58.04	61.28
KRH59429	Soybean	plastid	60.39	61.23
Os02t0750400-01	Rice	cytosol	25.29	60.85
Bra011847.1-P	Field mustard	plastid	57.45	60.29
TraesCS6D01G282900.1	Wheat	plastid	62.75	59.26
TraesCS6A01G303300.1	Wheat	plastid	62.55	59.07
KRH43291	Soybean	plastid	59.61	57.79
TraesCS6B01G332800.1	Wheat	plastid	61.76	55.65
HORVU6Hr1G075250.5	Barley	plastid	53.53	54.6
AT4G39620.1	Thale cress	plastid	58.04	52.58
GSMUA_Achr1P15160_001	Banana	plastid	21.76	22.61
GSMUA_Achr11P...	Banana	plastid	21.57	20.26
GSMUA_Achr1P10690_001	Banana	cytosol	12.94	19.94
GSMUA_Achr11P...	Banana	endoplasmic reticulum	21.37	16.08
GSMUA_Achr6P16830_001	Banana	cytosol	15.88	14.41
GSMUA_Achr9P12090_001	Banana	mitochondrion	19.22	14.24
GSMUA_Achr7P03530_001	Banana	cytosol	16.08	13.92
GSMUA_Achr1P18290_001	Banana	cytosol	17.65	13.55
GSMUA_Achr2P04910_001	Banana	plastid	20.2	12.36
GSMUA_Achr2P02090_001	Banana	cytosol	14.51	11.38
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	17.65	10.74
GSMUA_Achr8P07220_001	Banana	cytosol	15.1	7.08

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	EnsemblPlantsGene:GSMUA_Achr5G22880_001
EnsemblPlants:GSMUA_Achr5P22880_001	EnsemblPlants:GSMUA_Achr5T22880_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0T0W3	PFAM:PF01535
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294CEFC	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G22880_001]

Coordinates

chr5:+:24750660..24754142

Molecular Weight (calculated)

57996.6 Da

IEP (calculated)

9.836

GRAVY (calculated)

-0.289

Length

510 amino acids

Sequence
(BLAST)

001: MPLIRPASLC PLQFPNPSPL HFSRPKPWFA VVKAAGSVSA RPSRRAAPKS RDASEAAGSV STRPRRRSAP KSRDDSEAAE LVRVVLRKSG DGKEPLVVTL
101: SKFVRVVRTE HCFLLFEELG KRDNWLQCLE VFRWMQKQRW YIADNGIYSK LISVMGKKGQ TRMAMWLFSE MRNSGCRPDT SVYNALITAH LHSRDKSKAL
201: AKAIGYFEKM KGIERCRPNI VTYNILLRAF AQAGDVKQVE ALFKDLDEGI ISPDVYTYNG VMDAYGKNGM LKEMEAVLLR MKSNQCKPDS ITFNLLIDAY
301: GRRQAFDKME QVFKSLLRSK EKPTLPTFNS MITNYGKARL KEKAEYVLKK MVDLGFKPSY ITYECLMTTY GYCDCVSKAR EIFDEMISTQ KEIQISTLNA
401: MLEAYCMNGL PYEADQLLDY SIKRNLVPNA STYKLLYKAY AKANMKELIN NLLKHMDEQG IVPNKRFFLE ALETFGSTEN LVIETCTLSI RVINVASGAI
501: WSRSGTFFSC

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.