Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41990 | Canola | plastid | 75.31 | 90.02 |
| CDY42639 | Canola | plastid | 76.55 | 89.23 |
| Bra011847.1-P | Field mustard | plastid | 74.96 | 86.83 |
| VIT_07s0031g01360.t01 | Wine grape | plastid | 56.48 | 65.03 |
| PGSC0003DMT400033331 | Potato | plastid | 53.11 | 62.68 |
| Solyc04g054270.2.1 | Tomato | plastid | 52.75 | 62.13 |
| KRH59429 | Soybean | plastid | 55.06 | 61.63 |
| KRH43291 | Soybean | plastid | 54.35 | 58.17 |
| GSMUA_Achr5P22880_001 | Banana | plastid | 52.58 | 58.04 |
| Zm00001d052240_P001 | Maize | plastid | 49.56 | 55.91 |
| KXG30749 | Sorghum | plastid | 48.85 | 55.22 |
| TraesCS6A01G303300.1 | Wheat | plastid | 48.13 | 50.19 |
| TraesCS6D01G282900.1 | Wheat | plastid | 47.96 | 50.0 |
| Os02t0750400-01 | Rice | cytosol | 18.83 | 50.0 |
| TraesCS6B01G332800.1 | Wheat | plastid | 47.6 | 47.35 |
| HORVU6Hr1G075250.5 | Barley | plastid | 41.92 | 47.2 |
| AT3G06430.1 | Thale cress | plastid | 19.89 | 23.05 |
| AT5G48730.1 | Thale cress | plastid | 19.18 | 21.26 |
| AT3G53170.2 | Thale cress | plastid | 18.83 | 21.24 |
| AT5G36300.2 | Thale cress | cytosol | 10.3 | 17.58 |
| AT2G35130.2 | Thale cress | endoplasmic reticulum, golgi | 15.28 | 14.03 |
| AT2G18940.1 | Thale cress | plastid | 19.36 | 13.26 |
| AT5G42310.1 | Thale cress | plastid | 16.7 | 13.26 |
| AT3G59040.2 | Thale cress | endoplasmic reticulum | 12.26 | 11.69 |
| AT5G02860.2 | Thale cress | plastid | 16.7 | 11.48 |
| AT1G74850.1 | Thale cress | plastid | 16.7 | 10.9 |
| AT2G41720.1 | Thale cress | cytosol, plastid | 15.45 | 10.58 |
| AT2G31400.1 | Thale cress | plastid | 15.81 | 9.69 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:830116 | ProteinID:AAW62964.1 | ProteinID:AEE87094.1 | ArrayExpress:AT4G39620 |
| EnsemblPlantsGene:AT4G39620 | RefSeq:AT4G39620 | TAIR:AT4G39620 | RefSeq:AT4G39620-TAIR-G | EnsemblPlants:AT4G39620.1 | TAIR:AT4G39620.1 |
| Unigene:At.50413 | EMBL:BX826642 | ProteinID:CAB44697.1 | ProteinID:CAB80625.1 | Symbol:EMB2453 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_195672.1 | PFAM:PF01535 |
| PFAM:PF13041 | PFAM:PF13812 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF490 | InterPro:Pentatricopeptide_repeat |
| UniProt:Q9SV96 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000009CA08 | SEG:seg | : |
Description
EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
Coordinates
chr4:+:18395294..18397587
Molecular Weight (calculated)
65306.0 Da
IEP (calculated)
9.947
GRAVY (calculated)
-0.592
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.