Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64953 | Canola | cytosol | 63.03 | 71.48 |
| CDX74617 | Canola | mitochondrion | 66.97 | 62.96 |
| Bra035352.1-P | Field mustard | mitochondrion | 76.67 | 52.49 |
| GSMUA_Achr1P10690_001 | Banana | cytosol | 44.55 | 44.41 |
| Solyc10g080330.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 43.33 | 37.53 |
| VIT_16s0039g02560.t01 | Wine grape | cytosol | 54.55 | 36.73 |
| KRH27783 | Soybean | cytosol, plastid | 51.52 | 32.57 |
| PGSC0003DMT400060882 | Potato | mitochondrion | 53.64 | 32.54 |
| TraesCS7A01G407400.1 | Wheat | cytosol | 44.55 | 32.17 |
| KRH77730 | Soybean | plastid | 50.0 | 31.55 |
| Os06t0710800-01 | Rice | cytosol | 46.67 | 31.3 |
| OQU77078 | Sorghum | mitochondrion | 44.85 | 29.96 |
| HORVU0Hr1G007320.4 | Barley | cytosol | 41.52 | 29.72 |
| TraesCS7B01G307500.2 | Wheat | cytosol | 45.45 | 28.9 |
| TraesCS7D01G400900.3 | Wheat | cytosol | 45.15 | 28.71 |
| HORVU7Hr1G095190.4 | Barley | mitochondrion, plastid | 43.94 | 28.43 |
| Zm00001d014751_P003 | Maize | plastid | 40.61 | 25.19 |
| AT5G42310.1 | Thale cress | plastid | 37.27 | 17.35 |
| AT5G48730.1 | Thale cress | plastid | 18.48 | 12.01 |
| AT3G53170.2 | Thale cress | plastid | 15.76 | 10.42 |
| AT4G39620.1 | Thale cress | plastid | 17.58 | 10.3 |
| AT3G06430.1 | Thale cress | plastid | 13.94 | 9.47 |
| AT5G02860.2 | Thale cress | plastid | 22.12 | 8.91 |
| AT3G59040.2 | Thale cress | endoplasmic reticulum | 15.45 | 8.64 |
| AT2G35130.2 | Thale cress | endoplasmic reticulum, golgi | 14.85 | 7.99 |
| AT2G18940.1 | Thale cress | plastid | 17.88 | 7.18 |
| AT1G74850.1 | Thale cress | plastid | 17.88 | 6.84 |
| AT2G41720.1 | Thale cress | cytosol, plastid | 16.36 | 6.57 |
| AT2G31400.1 | Thale cress | plastid | 15.15 | 5.45 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:3771327 | ProteinID:AED94067.1 | ProteinID:ANM71076.1 | ArrayExpress:AT5G36300 |
| EnsemblPlantsGene:AT5G36300 | RefSeq:AT5G36300 | TAIR:AT5G36300 | RefSeq:AT5G36300-TAIR-G | EnsemblPlants:AT5G36300.2 | Unigene:At.74627 |
| ProteinID:BAB10889.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_001154751.1 | RefSeq:NP_001332632.1 |
| PFAM:PF01535 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF483 | InterPro:Pentatricopeptide_repeat |
| UniProt:Q9FFZ2 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001B04C14 | : | : |
Description
Putative pentatricopeptide repeat-containing protein At5g36300 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ2]
Coordinates
chr5:+:14320578..14322208
Molecular Weight (calculated)
38109.6 Da
IEP (calculated)
8.828
GRAVY (calculated)
-0.056
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPISHTRIS LSMYNSWIRY FCRTGETNEA MSLLAEIHSL GSRPDPLSYV SFIETLASLR RTLEADALFH EVVRFMIYGS YSVRLYNALV SRYLRKEVSW
101: RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QVLEKLQRSS DSRPNIRTWN SLIRWHCHHG
201: AVDMALELFT MIFEDIGELV GKLKSQGVAP SANLFCTLAN AYAQQGLCKQ TVKVLKMMEN EGIEPNLIML NVLINAFGTA GKHMEALSIY HHIKETVWIH
301: PDVVTYSTLM KAFTRAKKYE MVCSFYLVTL
101: RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QVLEKLQRSS DSRPNIRTWN SLIRWHCHHG
201: AVDMALELFT MIFEDIGELV GKLKSQGVAP SANLFCTLAN AYAQQGLCKQ TVKVLKMMEN EGIEPNLIML NVLINAFGTA GKHMEALSIY HHIKETVWIH
301: PDVVTYSTLM KAFTRAKKYE MVCSFYLVTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.