Factsheet for Os06t0710800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G407400.1	Wheat	cytosol	79.27	85.34
OQU77078	Sorghum	mitochondrion	83.94	83.6
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	84.76	81.76
TraesCS7B01G307500.2	Wheat	cytosol	84.55	80.15
TraesCS7D01G400900.3	Wheat	cytosol	84.35	79.96
HORVU0Hr1G007320.4	Barley	cytosol	72.76	77.66
Zm00001d014751_P003	Maize	plastid	76.63	70.86
GSMUA_Achr1P10690_001	Banana	cytosol	45.33	67.37
VIT_16s0039g02560.t01	Wine grape	cytosol	55.08	55.31
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	42.48	54.86
CDY64953	Canola	cytosol	32.11	54.3
KRH27783	Soybean	cytosol, plastid	52.44	49.43
KRH77730	Soybean	plastid	51.63	48.57
Bra035352.1-P	Field mustard	mitochondrion	46.34	47.3
CDX74617	Canola	mitochondrion	33.74	47.29
AT5G36300.2	Thale cress	cytosol	31.3	46.67
PGSC0003DMT400060882	Potato	mitochondrion	46.34	41.91
Os07t0548300-01	Rice	plastid	32.52	24.81
Os02t0170000-02	Rice	cytosol	19.72	20.68
Os02t0750400-01	Rice	cytosol	7.52	17.45
Os03t0115300-00	Rice	plastid	16.46	16.53
Os06t0172000-01	Rice	plastid	16.67	16.05
Os07t0590600-00	Rice	plastid	23.78	14.92
Os03t0309800-02	Rice	plastid	14.43	14.17
Os05t0275000-01	Rice	cytosol, plastid	22.76	14.12
Os08t0191900-01	Rice	plastid	17.28	13.96
Os07t0213300-01	Rice	cytosol	18.5	13.44
Os03t0824100-01	Rice	plastid	21.14	11.98
Os12t0562300-01	Rice	cytosol	6.3	10.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:9268482	EMBL:AK063542	ProteinID:BAD53645.1	ProteinID:BAH93719.1
ProteinID:BAS99450.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os06g0710800	EnsemblPlants:Os06t0710800-01
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF483
InterPro:Pentatricopeptide_repeat	UniProt:Q5Z9G2	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000446DF8	RefSeq:XP_015644397.1
RefSeq:XP_015644398.1	RefSeq:XP_015644399.1	RefSeq:XP_015644401.1	SEG:seg	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os06t0710800-01)

Coordinates

chr6:+:30059823..30062859

Molecular Weight (calculated)

55141.3 Da

IEP (calculated)

9.177

GRAVY (calculated)

-0.193

Length

492 amino acids

Sequence
(BLAST)

001: MDAYYLVRLH LPPPLQLPPT LPLPRGRHDR RVGGAVACRA TAGPVGSQER PWESYDRGIQ HHAGSDLASS LRLLADMQAA GLRPSGAAYA RLIRALARAG
101: RTLEAEALLL EMRRLGLRPD AAHYNALLEG LLSTAHLRLA DRLLLQMADD GVARNRRTYM LLLNAYARAG RLEDSWWVLG EMKRRGIRLD TAGYSTLVRL
201: YRDNGMWKKA TDLIMEMQEL GVELDVKIYN GLIDTFGKYG QLADARKVFD KMCAEGVKPD ITTWNSLIRW HCRVGNTKRA LRFFAAMQEE GMYPDPKIFV
301: TIISRLGEQG KWDEIKKLFH GMRNRGLKES GAVYAVLVDI YGQYGHFRDA HDCVAALKAE NLQLSPSIFC VLANAYAQQG LCEQTVNVLQ LMEAEGIEPN
401: LVMLNLLINA FGTAGRHLEA LAVLQHIKDS GMSPDVVTYT TLMKAFMRAK KFEKVSEVYK EMEGAGCTPD RKAREMLNDA SIVLEQRGML HL

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.