Factsheet for TraesCS7B01G307500.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	94.22	95.88
TraesCS7A01G407400.1	Wheat	cytosol	84.39	95.84
TraesCS7D01G400900.3	Wheat	cytosol	95.76	95.76
Os06t0710800-01	Rice	cytosol	80.15	84.55
HORVU0Hr1G007320.4	Barley	cytosol	74.95	84.38
OQU77078	Sorghum	mitochondrion	78.03	81.98
Zm00001d014751_P003	Maize	plastid	70.52	68.8
GSMUA_Achr1P10690_001	Banana	cytosol	42.58	66.77
VIT_16s0039g02560.t01	Wine grape	cytosol	50.87	53.88
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	39.11	53.28
CDY64953	Canola	cytosol	29.29	52.23
KRH27783	Soybean	cytosol, plastid	47.78	47.51
KRH77730	Soybean	plastid	47.4	47.04
CDX74617	Canola	mitochondrion	30.83	45.58
AT5G36300.2	Thale cress	cytosol	28.9	45.45
Bra035352.1-P	Field mustard	mitochondrion	41.81	45.02
PGSC0003DMT400060882	Potato	mitochondrion	42.97	40.99
TraesCS2B01G238300.1	Wheat	plastid	34.87	27.06
TraesCS7B01G033900.1	Wheat	plastid	15.99	16.37
TraesCS4B01G359900.1	Wheat	plastid	15.22	15.71
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	14.84	14.61
TraesCS2B01G212000.1	Wheat	plastid	22.16	14.47
TraesCS6B01G332800.1	Wheat	plastid	15.61	14.31
TraesCS7B01G401800.2	Wheat	plastid	21.77	13.87
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	16.38	13.56
TraesCS2B01G269700.1	Wheat	plastid	18.69	11.89
TraesCS5B01G500100.1	Wheat	plastid	20.04	11.83
TraesCS5B01G091600.1	Wheat	plastid	19.46	11.77

Protein Annotations

EnsemblPlants:TraesCS7B01G307500.2	EnsemblPlantsGene:TraesCS7B01G307500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF483
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:551464277..551467075

Molecular Weight (calculated)

59031.2 Da

IEP (calculated)

8.996

GRAVY (calculated)

-0.159

Length

519 amino acids

Sequence
(BLAST)

001: MDACCLVRRH LHQPLQLPPL QCLTLGRCCR RRRRGVAIAV AFCSTAPDHH RERPWESYDR DIQPRAGSDL ARSLQLLADM QAAGMRPSAA AYARLIRALA
101: RAGRTLEAEA LLLEMRHLGL RPDSAHYNAL LEGLLARAHL RLADRLLLQM ADDGVARNRR TYMLLLDAYA RAGRLEDSWW VLGEMKRRGI RLGTAGYSTL
201: VRLYRDSGMW KKATDLIMEM QEVGVELDVK IYNGLIDTFG KYGQLADARR VFEKMRGQGI KPDIATWNAL IRWHCRVGNM KRALRFLAAM QEEGMYPDPK
301: IFITIISRLG EQGKWDELKE LFDKMRNRGF KESGAIYAVL VDIYGQYGHF RDAQECVAAL KAENLQLSPS IFCVLANAYA QQGLCEQTVS VLQLMEAEGI
401: EPNLVMLNLL INAFSTAGRH SEALAVFQHI KDSGMSPDVV TYTTLMKAFM RVKRYEKVSE VYSEMERAGC TPDRKAREML HDVSVTLEQM GCKCFICTFA
501: AVFLWFSRMY WLTHALPGY

Best Arabidopsis Sequence Match ( AT5G36300.2 )
(BLAST)

001: MAPISHTRIS LSMYNSWIRY FCRTGETNEA MSLLAEIHSL GSRPDPLSYV SFIETLASLR RTLEADALFH EVVRFMIYGS YSVRLYNALV SRYLRKEVSW
101: RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QVLEKLQRSS DSRPNIRTWN SLIRWHCHHG
201: AVDMALELFT MIFEDIGELV GKLKSQGVAP SANLFCTLAN AYAQQGLCKQ TVKVLKMMEN EGIEPNLIML NVLINAFGTA GKHMEALSIY HHIKETVWIH
301: PDVVTYSTLM KAFTRAKKYE MVCSFYLVTL

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At5g36300 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.