Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G132900.3 | Wheat | plastid | 97.91 | 95.38 |
| TraesCS4A01G178100.5 | Wheat | plastid | 97.72 | 95.19 |
| HORVU4Hr1G024360.2 | Barley | endoplasmic reticulum, vacuole | 97.15 | 88.58 |
| Os03t0309800-02 | Rice | plastid | 74.19 | 78.04 |
| EER97871 | Sorghum | plastid | 72.49 | 68.21 |
| Zm00001d018693_P001 | Maize | plastid | 70.97 | 65.5 |
| CDY24692 | Canola | plastid | 54.46 | 59.79 |
| KRH02451 | Soybean | plastid | 55.22 | 59.63 |
| KRH02371 | Soybean | plastid | 54.84 | 59.22 |
| VIT_05s0020g00690.t01 | Wine grape | plastid | 55.79 | 59.04 |
| GSMUA_Achr11P... | Banana | plastid | 60.53 | 58.75 |
| CDY05264 | Canola | plastid | 54.46 | 58.57 |
| Bra020748.1-P | Field mustard | plastid | 54.46 | 58.45 |
| AT3G06430.1 | Thale cress | plastid | 53.51 | 58.02 |
| Solyc12g098990.1.1 | Tomato | plastid | 53.89 | 57.37 |
| PGSC0003DMT400011734 | Potato | plastid | 53.7 | 57.17 |
| Solyc01g057200.2.1 | Tomato | plastid | 49.72 | 55.74 |
| PGSC0003DMT400022191 | Potato | plastid | 52.37 | 55.09 |
| KRH37687 | Soybean | plastid | 44.78 | 48.66 |
| TraesCS7B01G033900.1 | Wheat | plastid | 32.83 | 34.12 |
| TraesCS4B01G359900.1 | Wheat | plastid | 31.12 | 32.6 |
| TraesCS6B01G332800.1 | Wheat | plastid | 20.49 | 19.08 |
| TraesCS7B01G307500.2 | Wheat | cytosol | 14.61 | 14.84 |
| TraesCS2B01G212000.1 | Wheat | plastid | 20.11 | 13.33 |
| TraesCS2B01G238300.1 | Wheat | plastid | 16.89 | 13.3 |
| TraesCS7B01G401800.2 | Wheat | plastid | 19.73 | 12.76 |
| TraesCS5B01G500100.1 | Wheat | plastid | 18.6 | 11.15 |
| TraesCS5B01G091600.1 | Wheat | plastid | 17.46 | 10.72 |
| TraesCS6B01G186300.2 | Wheat | cytosol, mitochondrion | 12.71 | 10.69 |
| TraesCS2B01G269700.1 | Wheat | plastid | 15.94 | 10.29 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009553 | GO:GO:0009555 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009856 | GO:GO:0019843 | GO:GO:0048868 |
| InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF301 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS4B01G138200 | EnsemblPlants:TraesCS4B01G138200.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:182240958..182242672
Molecular Weight (calculated)
59617.5 Da
IEP (calculated)
8.951
GRAVY (calculated)
-0.519
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAGATNAT FRPRLVTAAA DTSDTNTRRR HWKAGEFPFP TTSPSSGTQQ RRRPRTTERP PPPPPSKGED PEGRGRQRHW KAGEDPEGRG RQRHWRAGEF
101: PAAAESQSQS GRRGRARTPI KNVQKRLDAR ADAKAWACTV TEALADRIAA KNWREALQVF EMLKEQPFYY PKEGTYMKLL LLLGRSGQPS LAQHLFTEMQ
201: QQGCRPTPEL YTALIGAYCR NGVLDEALKL LEYMKAAPLC QPDVYTYSIL IKAFVDASRF DLVDAMYKEM AERSVAPNTV TQNIVLSGYC RAGRLDDMEK
301: LLSAMLESAN SKPDVWTMNI ILSLFGNSGQ VELMEKWYEK FRGYGIEPET RTFNILIGAY GKKRMYDKMS AVMEYMRRLA FPWTTATYNN VIEAFAEAGD
401: AKNMEDTFNQ MRSEGMKPDT KTFCCLINGF SNAALFHKVV GMVKLAERLD VPANTSFHNS VLAACAKAED LMEMERVFRH MKHMQCEPDA ITYSILLEAY
501: RKEGMTDKMY ALQQENPSLV STELAMV
101: PAAAESQSQS GRRGRARTPI KNVQKRLDAR ADAKAWACTV TEALADRIAA KNWREALQVF EMLKEQPFYY PKEGTYMKLL LLLGRSGQPS LAQHLFTEMQ
201: QQGCRPTPEL YTALIGAYCR NGVLDEALKL LEYMKAAPLC QPDVYTYSIL IKAFVDASRF DLVDAMYKEM AERSVAPNTV TQNIVLSGYC RAGRLDDMEK
301: LLSAMLESAN SKPDVWTMNI ILSLFGNSGQ VELMEKWYEK FRGYGIEPET RTFNILIGAY GKKRMYDKMS AVMEYMRRLA FPWTTATYNN VIEAFAEAGD
401: AKNMEDTFNQ MRSEGMKPDT KTFCCLINGF SNAALFHKVV GMVKLAERLD VPANTSFHNS VLAACAKAED LMEMERVFRH MKHMQCEPDA ITYSILLEAY
501: RKEGMTDKMY ALQQENPSLV STELAMV
001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG
Arabidopsis Description
EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.