Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G332100.1 | Wheat | nucleus | 95.54 | 95.38 |
| TraesCS2A01G330900.1 | Wheat | nucleus | 94.57 | 94.34 |
| Os04t0471400-01 | Rice | nucleus | 56.69 | 56.42 |
| OQU81762 | Sorghum | nucleus | 55.56 | 55.42 |
| Zm00001d003333_P005 | Maize | nucleus | 53.61 | 53.35 |
| Zm00001d025668_P005 | Maize | nucleus | 53.53 | 53.27 |
| GSMUA_Achr10P... | Banana | nucleus | 24.33 | 27.35 |
| GSMUA_Achr9P12690_001 | Banana | nucleus | 27.98 | 27.29 |
| GSMUA_Achr4P01620_001 | Banana | nucleus | 27.33 | 26.6 |
| GSMUA_Achr5P04160_001 | Banana | nucleus | 19.79 | 26.24 |
| CDY36785 | Canola | nucleus | 11.44 | 24.31 |
| AT5G56250.1 | Thale cress | nucleus | 15.9 | 24.17 |
| CDY06514 | Canola | nucleus, plastid | 13.38 | 23.95 |
| Bra035611.1-P | Field mustard | nucleus, plastid | 14.11 | 23.87 |
| CDY20740 | Canola | plastid | 14.19 | 23.68 |
| GSMUA_Achr3P10940_001 | Banana | nucleus | 24.98 | 23.55 |
| Bra028941.1-P | Field mustard | nucleus, plastid | 14.27 | 23.37 |
| CDY36786 | Canola | nucleus, plastid | 14.27 | 23.37 |
| GSMUA_Achr10P... | Banana | nucleus | 21.33 | 23.3 |
| CDY11950 | Canola | nucleus | 13.95 | 22.63 |
| GSMUA_Achr7P20270_001 | Banana | nucleus | 24.01 | 22.49 |
| CDY06515 | Canola | nucleus, plastid | 16.46 | 22.46 |
| CDY62101 | Canola | nucleus | 12.08 | 21.78 |
| Bra035610.1-P | Field mustard | nucleus, plastid | 16.46 | 21.19 |
| CDY11951 | Canola | nucleus, plastid | 15.17 | 20.96 |
| CDY65749 | Canola | nucleus | 14.6 | 20.41 |
| CDY32803 | Canola | nucleus | 15.65 | 20.32 |
| CDY17406 | Canola | nucleus, plastid | 15.09 | 19.94 |
| Bra028942.1-P | Field mustard | nucleus | 15.49 | 19.92 |
| Bra002832.1-P | Field mustard | nucleus | 15.57 | 19.81 |
| CDY32802 | Canola | nucleus | 9.57 | 19.67 |
| Bra002831.1-P | Field mustard | nucleus | 9.57 | 19.67 |
| AT5G56240.3 | Thale cress | nucleus | 15.57 | 19.45 |
| VIT_19s0015g01810.t01 | Wine grape | nucleus | 20.6 | 18.26 |
| CDY36783 | Canola | cytosol | 1.7 | 17.65 |
| Solyc07g066200.2.1 | Tomato | nucleus | 18.33 | 16.87 |
| PGSC0003DMT400056953 | Potato | nucleus | 18.82 | 16.63 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G351400.1 | EnsemblPlantsGene:TraesCS2B01G351400 | PANTHER:PTHR35767 | PANTHER:PTHR35767:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2B:-:500188902..500196194
Molecular Weight (calculated)
135924.0 Da
IEP (calculated)
8.231
GRAVY (calculated)
-0.770
Length
1233 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSSDHPSGP SCSSQSVVRG VGADPTTFHA ADSPESAHQD HVDRVQPCPT FSIRDYVFDS RSKGIKRSWP FHPQSLELCL KRGVKDLLPP FEPPNLLRSR
0101: SFYTCVDSEQ SAACPEADAF VDLVKAREAG LTNVNTAGIN LQSCQSADES LGPSQYTPTE GGKTGTDQDG NVNELGDTSE AIQAYQEDNI CTKGSSRTEV
0201: ARPYLKSLGS SRETSEKKGK LLVKSGSMTD IRQRKDLSYY SSSVLNPKAS NTCPVCKVFS SPSNTTLNAH IDQCLYAVSN AEPVVETVIV KPKVKQRKMQ
0301: LMVDIYKTAL PYTLDDLDRR NGTNWAIDLS VPAVNKVVCT KNRSPRVVPS EAKDSERDSD VYVDSNGIKI RILSKPIGAP LVLGNDGLKQ VEKHQTGKST
0401: LMKKTSLESK SFRNKKFKVH GKKCNRLNHL KSQVELYPDE DIHADTSEEE LTMRTQKPTE SSSCGRSGTI RQWVCSKRSG ITNNLSRKSN NTSSDSMKPG
0501: TKKLARSRMI GGFDDPQITE SYTEVFSSRS TEETATTLEV NGNDDQEKGS SRLFRSIPRW SSENPSSSSA FPKVPRSAAT LAKRKIKEIG RREASRSDKY
0601: DTVRNSTSTK CSEPCLSVSI RGLSNDSKRA VSTSKVLRKH RSVSRTRKRD FSPSVSGLVN DFGQEHELDH RHVNNTFSVT NNGTSDKVVK HTQEDTTDND
0701: ISYGTDMLAL GQGDHQHDVT QQTTSTHMDS EGEEHATQMQ CTSVSRNTHE DCCSAISSGS LSLENSKTVP KGSSSMQDQC STKQSTHTHV SNIVTNNEME
0801: ECQVDPASTK ESSTCVTNNR EMGLATPRDN SSITSNREDS NQDHVFLAFG RDSSDSPISV ASTMSSPVAL NGSRNEESGP GQSTVNVRTL EKSMSGSSNQ
0901: ETKSMPPARE GEQLAKEKLY CCSCRESISR ESHLDHESST ARSDTFARKQ VPQLHMGLRT SSSFSTYQRT DTNSNPYLDS HGQLLTGKVF TESSMSSLSY
1001: ATDCIRPALQ TQLPSPPSPM LRLMGKNLMV MNSQESGRPQ APKPDYMVGG NYMPPASFVP PDYQHSHSAF IDRTPSASHQ IPLPSVQAGN FVGPPMHGGF
1101: MVKSNHHSLQ KPYRNPAPVM HHPTYMMKEV IMINDDPPEC RSEPQVSMHP PTGTYPTSIS VPNNFGPRPF YCHPPPMQIL PRENFAGSMP VFPMFGAQRQ
1201: QVRYSQSLHL TPSRVQPPQG YINPRVYYPQ DLR
0101: SFYTCVDSEQ SAACPEADAF VDLVKAREAG LTNVNTAGIN LQSCQSADES LGPSQYTPTE GGKTGTDQDG NVNELGDTSE AIQAYQEDNI CTKGSSRTEV
0201: ARPYLKSLGS SRETSEKKGK LLVKSGSMTD IRQRKDLSYY SSSVLNPKAS NTCPVCKVFS SPSNTTLNAH IDQCLYAVSN AEPVVETVIV KPKVKQRKMQ
0301: LMVDIYKTAL PYTLDDLDRR NGTNWAIDLS VPAVNKVVCT KNRSPRVVPS EAKDSERDSD VYVDSNGIKI RILSKPIGAP LVLGNDGLKQ VEKHQTGKST
0401: LMKKTSLESK SFRNKKFKVH GKKCNRLNHL KSQVELYPDE DIHADTSEEE LTMRTQKPTE SSSCGRSGTI RQWVCSKRSG ITNNLSRKSN NTSSDSMKPG
0501: TKKLARSRMI GGFDDPQITE SYTEVFSSRS TEETATTLEV NGNDDQEKGS SRLFRSIPRW SSENPSSSSA FPKVPRSAAT LAKRKIKEIG RREASRSDKY
0601: DTVRNSTSTK CSEPCLSVSI RGLSNDSKRA VSTSKVLRKH RSVSRTRKRD FSPSVSGLVN DFGQEHELDH RHVNNTFSVT NNGTSDKVVK HTQEDTTDND
0701: ISYGTDMLAL GQGDHQHDVT QQTTSTHMDS EGEEHATQMQ CTSVSRNTHE DCCSAISSGS LSLENSKTVP KGSSSMQDQC STKQSTHTHV SNIVTNNEME
0801: ECQVDPASTK ESSTCVTNNR EMGLATPRDN SSITSNREDS NQDHVFLAFG RDSSDSPISV ASTMSSPVAL NGSRNEESGP GQSTVNVRTL EKSMSGSSNQ
0901: ETKSMPPARE GEQLAKEKLY CCSCRESISR ESHLDHESST ARSDTFARKQ VPQLHMGLRT SSSFSTYQRT DTNSNPYLDS HGQLLTGKVF TESSMSSLSY
1001: ATDCIRPALQ TQLPSPPSPM LRLMGKNLMV MNSQESGRPQ APKPDYMVGG NYMPPASFVP PDYQHSHSAF IDRTPSASHQ IPLPSVQAGN FVGPPMHGGF
1101: MVKSNHHSLQ KPYRNPAPVM HHPTYMMKEV IMINDDPPEC RSEPQVSMHP PTGTYPTSIS VPNNFGPRPF YCHPPPMQIL PRENFAGSMP VFPMFGAQRQ
1201: QVRYSQSLHL TPSRVQPPQG YINPRVYYPQ DLR
001: MFLSTENPPN DPLSSSSSPF LQHLTSSSHE LGQSHLSNFS IRDYAYSNRK NNIKNNWPFS SKSLQLFSTH GVTNPLPPFQ KFSTVSSKFE TTASPSSGKQ
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEI RGVQRGFSGE GSHMGHHRRI
401: YNQRMLAKRG LVSKKLNEKG HELSEDDEDT WSGGDPTVLR GTDLSATDSY PLKKQKLGSE VAGRKKTLFR SQSAQSRSFR VPQSEKEDES LEGVNINRLK
501: KSVASFQEDK YPPGKKFCSD ASPRGTSMRK FSPPFVPNAW RRLSMPVELK KARLDFSEEK DDEETGKWES EMTHERELRD DDYVSGDDGE NNEVLLRSNP
601: SSSGYDDYND DDEESSEEEG DNNKRAHVLD QTDYTGAEFY QSESDSPTSI EILPSERAMY YSEAGNMIYG QTSCKEDERF DSEVGQGSLF VEVDTIPIPG
701: PPGSFLPSPR DMGFDENLGN SSVITSQVQS SMDQLDRNSS ESPVSAVSNF AAGRLNFPAE LSSFRENFSP DIAMSYSTTP MSFCVPSHHG TITEAEPITI
801: DKTISPSRFR NNDQESCCCQ RKERISEGIT LNHQGSHLLQ RRAASSSNTM NLTNSPTRLD PNHPFEQSPY KTQQALDLQM SKFSSRKSLN AVVPPSPSNP
901: VLRLMGKDLM VMNQGEADEE ASRSSLTPNP QFVDPPCGGT GLYFNTGLYL RNSFDSTHQP QVQAQQQSQA AAFRNNFDHV RYFSPS
101: IVSSYVHQGR DLDLAKLGLN QTVAETSSKG VCSQSRIIEN GLFPSTSVSK SEVEILVATT SNKKDNHSRK CGRGMVKSKE DSCAGLVTTS ESIMASKTCP
201: ICKTFSSASN TTLNAHIDQC LSVDSALLPP VVFSKPNKPR SKPPRVKVKT MVDIYASAKQ GTLEDLDRRN GTKWVSILSY SNRVVADKSE VSKKRKVSPV
301: GVGPVYIDAK GQKLRILSGF SEKKSSTTPL REQHEDGSSD KKCLGQGSKG TNKSLRKIRR GKKPHKFVKL TNHKADGPEI RGVQRGFSGE GSHMGHHRRI
401: YNQRMLAKRG LVSKKLNEKG HELSEDDEDT WSGGDPTVLR GTDLSATDSY PLKKQKLGSE VAGRKKTLFR SQSAQSRSFR VPQSEKEDES LEGVNINRLK
501: KSVASFQEDK YPPGKKFCSD ASPRGTSMRK FSPPFVPNAW RRLSMPVELK KARLDFSEEK DDEETGKWES EMTHERELRD DDYVSGDDGE NNEVLLRSNP
601: SSSGYDDYND DDEESSEEEG DNNKRAHVLD QTDYTGAEFY QSESDSPTSI EILPSERAMY YSEAGNMIYG QTSCKEDERF DSEVGQGSLF VEVDTIPIPG
701: PPGSFLPSPR DMGFDENLGN SSVITSQVQS SMDQLDRNSS ESPVSAVSNF AAGRLNFPAE LSSFRENFSP DIAMSYSTTP MSFCVPSHHG TITEAEPITI
801: DKTISPSRFR NNDQESCCCQ RKERISEGIT LNHQGSHLLQ RRAASSSNTM NLTNSPTRLD PNHPFEQSPY KTQQALDLQM SKFSSRKSLN AVVPPSPSNP
901: VLRLMGKDLM VMNQGEADEE ASRSSLTPNP QFVDPPCGGT GLYFNTGLYL RNSFDSTHQP QVQAQQQSQA AAFRNNFDHV RYFSPS
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: /.../BLink). [Source:TAIR;Acc:AT5G56240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.