Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G237400.1 | Wheat | mitochondrion, nucleus | 71.48 | 71.21 |
| TraesCS4B01G077700.1 | Wheat | cytosol | 64.64 | 64.89 |
| HORVU4Hr1G013180.1 | Barley | nucleus | 65.78 | 50.44 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 34.6 | 33.09 |
| KRH35698 | Soybean | nucleus | 22.43 | 23.98 |
| CDY32837 | Canola | nucleus | 19.77 | 23.21 |
| KRG91075 | Soybean | nucleus | 20.53 | 22.88 |
| CDY16531 | Canola | nucleus | 19.39 | 22.77 |
| Bra014221.1-P | Field mustard | nucleus | 19.01 | 22.62 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 22.05 | 21.01 |
| CDY61552 | Canola | nucleus | 19.01 | 20.92 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 20.91 | 20.68 |
| CDY20854 | Canola | nucleus | 18.63 | 20.25 |
| Bra039652.1-P | Field mustard | nucleus | 18.63 | 20.16 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 20.91 | 19.78 |
| AT1G49850.1 | Thale cress | nucleus | 17.87 | 18.8 |
| PGSC0003DMT400066172 | Potato | nucleus | 19.39 | 17.71 |
| Solyc01g107290.2.1 | Tomato | nucleus | 17.87 | 17.03 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G076100.1 | EnsemblPlantsGene:TraesCS4D01G076100 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | PFAM:PF13639 | PFscan:PS50089 | SMART:SM00184 |
| SUPFAM:SSF57850 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:50757931..50758827
Molecular Weight (calculated)
29138.2 Da
IEP (calculated)
6.969
GRAVY (calculated)
-0.288
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MQYRSARTLS RLILFPVPTF VKYWTSVSIN FSDSGLWISH LSICLTQGYE VVRGNQIERR ASSGSITEPT RNVLFSTRHS ATASNDRLPD AVQQAKERLH
101: QRLRSVDLFS GRRQTSPAVG TIWAGPDLPS ECDICSSEDG WLAHRTIRFN SSASLSAYKD KQITAETFSN AAVVAPHDLR PVSKLGQEAL QGTIDGDDDV
201: ESSVDCSICL EGCHGASDGL IQLRCKHIFH LACLEQWLQS RADCPYCRAG VVLSYHGKSD LEY
101: QRLRSVDLFS GRRQTSPAVG TIWAGPDLPS ECDICSSEDG WLAHRTIRFN SSASLSAYKD KQITAETFSN AAVVAPHDLR PVSKLGQEAL QGTIDGDDDV
201: ESSVDCSICL EGCHGASDGL IQLRCKHIFH LACLEQWLQS RADCPYCRAG VVLSYHGKSD LEY
001: MSSDMRDERF FYHRYLSVTN RTTPTTATNL PTSTSNMRST SLMTPRVAHT SMSSGGDFPD DRFFHARHQS ATDRAASNRS RAIMPISTTN VPSSTSNSPR
101: VLQTSMSRRG TSPMSSSTRR SVQASMSARE TVPSSTSTRS MQTSTSTPEI MPTSSRNVIT SSEEVANTFT QTSYIQFGSL WETNTTPSTR SWPTVPSSNS
201: PRVLQTSMSR RGTSPMSSST RRNVQSSMSG RETVSSSTST SSMQTSMSTP EIMPTSSRNV ITRSEEVANT FSTQTPYIQF GRLWETNTTS STRSRTTVPT
301: STTNVPSSNS SRVLQTSMST RGTFPMSSST RMSVQASMLA PGTVSSSMST VEIMPTSARN MITMSEEVAN SFTQTSYIQF GSLWETFKTV TKLSRVAMVE
401: NGECVICLEE WRKETYVTSS TSNMRTSSLM TLTRFIDEQI SLRATVSSTR TTARLLTNES PATIRAVAML PRVAMVEKGE CVICFEEWSK SDMETELPCK
501: HKYHLECVEK WLKIHTSCPQ CRYKLSCVYK SFLML
101: VLQTSMSRRG TSPMSSSTRR SVQASMSARE TVPSSTSTRS MQTSTSTPEI MPTSSRNVIT SSEEVANTFT QTSYIQFGSL WETNTTPSTR SWPTVPSSNS
201: PRVLQTSMSR RGTSPMSSST RRNVQSSMSG RETVSSSTST SSMQTSMSTP EIMPTSSRNV ITRSEEVANT FSTQTPYIQF GRLWETNTTS STRSRTTVPT
301: STTNVPSSNS SRVLQTSMST RGTFPMSSST RMSVQASMLA PGTVSSSMST VEIMPTSARN MITMSEEVAN SFTQTSYIQF GSLWETFKTV TKLSRVAMVE
401: NGECVICLEE WRKETYVTSS TSNMRTSSLM TLTRFIDEQI SLRATVSSTR TTARLLTNES PATIRAVAML PRVAMVEKGE CVICFEEWSK SDMETELPCK
501: HKYHLECVEK WLKIHTSCPQ CRYKLSCVYK SFLML
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80614]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.