Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G072600.1 | Wheat | nucleus | 82.18 | 89.33 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 86.91 | 87.23 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 84.0 | 84.93 |
| Os12t0580700-01 | Rice | nucleus | 58.55 | 62.4 |
| KXG23810 | Sorghum | cytosol | 54.18 | 57.09 |
| Zm00001d030843_P001 | Maize | nucleus | 41.09 | 46.12 |
| TraesCS4D01G076100.1 | Wheat | golgi, mitochondrion | 33.09 | 34.6 |
| KRG91075 | Soybean | nucleus | 22.91 | 26.69 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 26.55 | 26.45 |
| CDY32837 | Canola | nucleus | 21.09 | 25.89 |
| Bra014221.1-P | Field mustard | nucleus | 20.73 | 25.79 |
| CDY61552 | Canola | nucleus | 22.18 | 25.52 |
| Bra039652.1-P | Field mustard | nucleus | 22.55 | 25.51 |
| CDY16531 | Canola | nucleus | 20.73 | 25.45 |
| KRH35698 | Soybean | nucleus | 22.55 | 25.2 |
| CDY20854 | Canola | nucleus | 21.45 | 24.38 |
| PGSC0003DMT400066172 | Potato | nucleus | 25.45 | 24.31 |
| Solyc01g107290.2.1 | Tomato | nucleus | 24.36 | 24.28 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 24.36 | 24.1 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 23.27 | 24.06 |
| AT1G49850.1 | Thale cress | nucleus | 20.73 | 22.8 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G085300.1 | EnsemblPlantsGene:TraesCS5D01G085300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:90265693..90268128
Molecular Weight (calculated)
30102.2 Da
IEP (calculated)
6.683
GRAVY (calculated)
-0.596
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIASKLLYF QRRPSPAPPD PGPPEPPDQR RRPCRGASAS GPRRQRSSAV SHHHHHHHKP GQELVPANQR DGGKLVGCAG NKIEHIGFTC SSSRLSRSVS
101: DHGRLPDAVQ QARERLLQRL NSVDLSGRRE NTSCSETIWA GVVTHPADIG VSNLADSELG SLTSYFQSSV SITTYSEVQE TFLEPFSTVD NCMPVTPCTE
201: PVPVLQETAC QDAEDGENTA PSPECSICLE RCGEADGLMQ LRCKHVFHSA CLERWLRSHG DCPYCRGSVL LTSDE
101: DHGRLPDAVQ QARERLLQRL NSVDLSGRRE NTSCSETIWA GVVTHPADIG VSNLADSELG SLTSYFQSSV SITTYSEVQE TFLEPFSTVD NCMPVTPCTE
201: PVPVLQETAC QDAEDGENTA PSPECSICLE RCGEADGLMQ LRCKHVFHSA CLERWLRSHG DCPYCRGSVL LTSDE
001: MFNNTTTSFG SGPGIVVVPT PATTVPTTDF PGTTITSNST FIIIGPPPPF PAPPRSIDLT PLKLIFVVIA FVAVPALVYA LFFNGPCSSS RRNSSSSRTS
101: SSSDDTPHAT VDTPPITETT VTSESGGKFH KDTHSKEIGN ECSVCLMVFT DSDELRQLSE CKHAFHVLCI ETWLKDHPNC PICRTDVSVK QQTEAPNVPV
201: NVNGNVNRSG GNRRVSATSR DDDWRQGLPD ASSLV
101: SSSDDTPHAT VDTPPITETT VTSESGGKFH KDTHSKEIGN ECSVCLMVFT DSDELRQLSE CKHAFHVLCI ETWLKDHPNC PICRTDVSVK QQTEAPNVPV
201: NVNGNVNRSG GNRRVSATSR DDDWRQGLPD ASSLV
Arabidopsis Description
ATL33RING-H2 finger protein ATL33 [Source:UniProtKB/Swiss-Prot;Acc:O80927]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.