Factsheet for TraesCS6A01G188800.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G177500.2	Wheat	mitochondrion	92.19	92.19
TraesCS6B01G215700.2	Wheat	mitochondrion	92.19	92.19
HORVU6Hr1G044700.2	Barley	mitochondrion	89.84	88.8
Os02t0508000-01	Rice	mitochondrion	85.55	84.88
EES06863	Sorghum	mitochondrion	85.55	83.59
Zm00001d016566_P001	Maize	mitochondrion	84.77	73.31
GSMUA_Achr6P27510_001	Banana	mitochondrion	70.7	72.11
CDY16720	Canola	mitochondrion	70.7	71.83
CDY39864	Canola	mitochondrion	71.09	71.65
CDX84424	Canola	mitochondrion	70.31	71.43
Bra038640.1-P	Field mustard	mitochondrion	70.31	71.43
CDY31369	Canola	mitochondrion	70.31	71.43
Bra029221.1-P	Field mustard	mitochondrion	70.31	71.43
CDY68990	Canola	mitochondrion	70.31	71.43
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	70.31	71.15
PGSC0003DMT400039315	Potato	mitochondrion	69.92	71.03
VIT_17s0000g01240.t01	Wine grape	mitochondrion	67.97	71.02
GSMUA_Achr2P06160_001	Banana	mitochondrion	69.92	70.75
Solyc03g019720.2.1	Tomato	plastid	69.14	70.24
CDY05862	Canola	mitochondrion	69.14	69.96
KRH59820	Soybean	mitochondrion	68.75	69.57
CDY08089	Canola	mitochondrion	69.14	69.14
Bra018042.1-P	Field mustard	mitochondrion	69.14	69.14
AT3G48680.1	Thale cress	mitochondrion	68.75	68.75
Bra035840.1-P	Field mustard	mitochondrion	69.14	67.82
CDY66238	Canola	mitochondrion	70.31	65.22
AT5G63510.2	Thale cress	mitochondrion	68.75	63.08
TraesCS3A01G193500.1	Wheat	cytosol	21.88	21.37
TraesCS7A01G107200.1	Wheat	cytosol	21.88	21.37
TraesCS2A01G144200.1	Wheat	mitochondrion	20.7	19.34

Protein Annotations

EnsemblPlants:TraesCS6A01G188800.2	EnsemblPlantsGene:TraesCS6A01G188800	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061
PANTHER:PTHR13061:SF22	PFAM:PF00132	SEG:seg	SUPFAM:SSF51161	TIGR:cd04645	MapMan:2.4.1.4.7

Description

No Description!

Coordinates

chr6A:-:232202536..232210810

Molecular Weight (calculated)

27291.8 Da

IEP (calculated)

8.321

GRAVY (calculated)

0.115

Length

256 amino acids

Sequence
(BLAST)

001: MAAASLSRLS RRASAAAAPS LRRILSSTAT APAAPSSSPP PVAAAAAGAD RVRWDYRGQR QLVPLGQWLP KVAVDAYVAP DAVLAGQVTV HDGASVWSGS
101: VLRGDLNKIT LGFCANVQER SVLHAAWSAS TGLPAETLVD RYVTVGAYCL LRSCTIEPEC IIGQHSILME GSLVETNSVL EAGSVLAPGR RIPTGELWAG
201: NPARFVRKLT NEEIMEIPKL AVAINDLMQS HFSEFLPYSN AYLEVEKLKK SFSIPL

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.