CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY17034
CDY23649
CDY47592
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48680.1	CDY17034	AT1G47260.1	15821992
AT3G48680.1	CDY23649	AT1G47260.1	15821992
AT3G48680.1	CDY47592	AT1G47260.1	15821992
AT3G48680.1	CDY67628	AT1G47260.1	15821992

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08089	Canola	mitochondrion	97.63	96.48
AT3G48680.1	Thale cress	mitochondrion	94.47	93.36
CDY68990	Canola	mitochondrion	92.09	92.46
CDX84424	Canola	mitochondrion	91.7	92.06
CDY16720	Canola	mitochondrion	91.7	92.06
CDY31369	Canola	mitochondrion	90.12	90.48
CDY39864	Canola	mitochondrion	90.51	90.16
CDY66238	Canola	mitochondrion	91.3	83.7
KRH59820	Soybean	mitochondrion	75.49	75.49
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	74.7	74.7
VIT_17s0000g01240.t01	Wine grape	mitochondrion	72.33	74.69
Solyc03g019720.2.1	Tomato	plastid	72.73	73.02
GSMUA_Achr2P06160_001	Banana	mitochondrion	72.73	72.73
PGSC0003DMT400039315	Potato	mitochondrion	71.94	72.22
Os02t0508000-01	Rice	mitochondrion	71.94	70.54
GSMUA_Achr6P27510_001	Banana	mitochondrion	69.96	70.52
TraesCS6B01G215700.2	Wheat	mitochondrion	71.15	70.31
TraesCS6D01G177500.2	Wheat	mitochondrion	71.15	70.31
TraesCS6A01G188800.2	Wheat	golgi	69.96	69.14
HORVU6Hr1G044700.2	Barley	mitochondrion	70.75	69.11
EES06863	Sorghum	mitochondrion	71.15	68.7
Zm00001d016566_P001	Maize	mitochondrion	70.75	60.47
CDY50984	Canola	mitochondrion	24.11	23.46
CDY55089	Canola	mitochondrion	23.72	23.26
CDY45234	Canola	mitochondrion	22.13	22.13
CDY30772	Canola	mitochondrion	22.13	21.79
CDX83758	Canola	mitochondrion, plastid	21.74	20.45
CDX96658	Canola	mitochondrion	21.74	20.45
CDY47592	Canola	mitochondrion	21.34	19.57
CDY17034	Canola	mitochondrion	21.34	19.57
CDY67628	Canola	mitochondrion	20.95	19.2
CDY23649	Canola	mitochondrion	20.95	19.13
CDY29419	Canola	cytosol	11.07	15.22
CDY59959	Canola	mitochondrion	3.16	11.27
CDY39368	Canola	mitochondrion	10.28	10.7

Protein Annotations

EnsemblPlants:CDY05862	EnsemblPlantsGene:GSBRNA2T00121654001	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF22
ProteinID:CDY05862	ProteinID:CDY05862.1	SEG:seg	SUPFAM:SSF51161	UniParc:UPI0004EABD28	MapMan:2.4.1.4.7

Description

BnaC08g20390D

Coordinates

chrLK031966:+:99514..100964

Molecular Weight (calculated)

27659.3 Da

IEP (calculated)

7.855

GRAVY (calculated)

0.072

Length

253 amino acids

Sequence
(BLAST)

001: MATSLARISR RCVTSSNLIR RYFAAEAVAV ATTEAPKPIS EVTPSPDRVK WDYRGQRQII PLGQWLPKVA VDAYVAPNVV LAGQVTVWDG SSVWNGAVLR
101: GDLNKITLGF CSNVQERCVV HAAWSSPTGL PAETLIDRYV TVGAYSLLRS CTIEPECIIG QHSILMEGSL VETRSILEAG SVVPPGRRIP SGELWGGNPA
201: RFIRTLTNEE TLEIPKLAVA INHLSGDYFS EFLPYSTVYL EVEKFKKSLG IAV

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.