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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 9
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH41125 Soybean endoplasmic reticulum, mitochondrion 95.65 95.65
Bra038640.1-P Field mustard mitochondrion 76.28 76.59
CDY16720 Canola mitochondrion 75.89 76.19
CDY68990 Canola mitochondrion 75.89 76.19
VIT_17s0000g01240.t01 Wine grape mitochondrion 73.52 75.92
CDY05862 Canola mitochondrion 75.49 75.49
CDX84424 Canola mitochondrion 75.1 75.4
CDY39864 Canola mitochondrion 75.49 75.2
Bra029221.1-P Field mustard mitochondrion 74.7 75.0
CDY31369 Canola mitochondrion 74.7 75.0
CDY08089 Canola mitochondrion 75.49 74.61
Bra018042.1-P Field mustard mitochondrion 75.49 74.61
GSMUA_Achr2P06160_001 Banana mitochondrion 73.52 73.52
AT3G48680.1 Thale cress mitochondrion 74.31 73.44
Bra035840.1-P Field mustard mitochondrion 75.49 73.18
PGSC0003DMT400039315 Potato mitochondrion 72.73 73.02
Solyc03g019720.2.1 Tomato plastid 72.73 73.02
GSMUA_Achr6P27510_001 Banana mitochondrion 71.15 71.71
Os02t0508000-01 Rice mitochondrion 70.36 68.99
CDY66238 Canola mitochondrion 75.1 68.84
TraesCS6A01G188800.2 Wheat golgi 69.57 68.75
TraesCS6D01G177500.2 Wheat mitochondrion 68.77 67.97
TraesCS6B01G215700.2 Wheat mitochondrion 68.77 67.97
HORVU6Hr1G044700.2 Barley mitochondrion 69.57 67.95
AT5G63510.2 Thale cress mitochondrion 74.7 67.74
EES06863 Sorghum mitochondrion 68.77 66.41
Zm00001d016566_P001 Maize mitochondrion 67.98 58.11
KRH76755 Soybean mitochondrion 22.92 21.48
KRH28712 Soybean mitochondrion 22.92 21.48
KRH61146 Soybean cytosol 20.95 19.2
KRH51833 Soybean mitochondrion 20.55 19.05
KRH61144 Soybean cytosol 16.21 18.81
Protein Annotations
EMBL:ACUP02003342EnsemblPlants:KRH59820EnsemblPlantsGene:GLYMA_05G204300EntrezGene:100805621Gene3D:2.160.10.10InterPro:Trimer_LpxA-like_sf
PANTHER:PTHR13061PANTHER:PTHR13061:SF22ProteinID:KRH59820ProteinID:KRH59820.1SEG:segSUPFAM:SSF51161
UniParc:UPI00023399E4UniProt:I1K6N2MapMan:2.4.1.4.7:::
Description
hypothetical protein
Coordinates
chr5:-:38775847..38778779
Molecular Weight (calculated)
27734.4 Da
IEP (calculated)
8.331
GRAVY (calculated)
0.011
Length
253 amino acids
Sequence
(BLAST)
001: MANLAHFSKR ALRSAHALAR HHVQPQLLAA ERAFATEAAK SISPSADRVK WDYRGQRKII PLGQWLPKVA VDAYVAPNVV LAGQVTVWDG ASVWPGCVLR
101: GDLNKISVGF CSNVQERSVI HAAWSSPTGL PADTSIERYV TIGAYSLLRS CTIEPECIIG QHSILMEGSL VETQSILEAG SVVPPGRRIP TGELWAGNPA
201: RFVRTLTHEE ILEIPKLAVA INDLSRDHYS EFLPYSTVYL EVEKFKKSLG ISV
Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)
001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI
Arabidopsis Description
GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.