CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0508000-01	Rice	mitochondrion	88.93	90.31
TraesCS6D01G177500.2	Wheat	mitochondrion	85.11	87.11
TraesCS6B01G215700.2	Wheat	mitochondrion	85.11	87.11
TraesCS6A01G188800.2	Wheat	golgi	83.59	85.55
HORVU6Hr1G044700.2	Barley	mitochondrion	82.44	83.4
Zm00001d016566_P001	Maize	mitochondrion	85.11	75.34
GSMUA_Achr6P27510_001	Banana	mitochondrion	71.76	74.9
GSMUA_Achr2P06160_001	Banana	mitochondrion	71.37	73.91
Solyc03g019720.2.1	Tomato	plastid	70.23	73.02
CDY16720	Canola	mitochondrion	70.23	73.02
VIT_17s0000g01240.t01	Wine grape	mitochondrion	67.94	72.65
PGSC0003DMT400039315	Potato	mitochondrion	69.85	72.62
CDY68990	Canola	mitochondrion	69.47	72.22
Bra038640.1-P	Field mustard	mitochondrion	69.47	72.22
CDY31369	Canola	mitochondrion	69.08	71.83
CDX84424	Canola	mitochondrion	69.08	71.83
Bra029221.1-P	Field mustard	mitochondrion	69.08	71.83
CDY39864	Canola	mitochondrion	69.47	71.65
CDY05862	Canola	mitochondrion	68.7	71.15
Bra018042.1-P	Field mustard	mitochondrion	68.7	70.31
CDY08089	Canola	mitochondrion	68.32	69.92
AT3G48680.1	Thale cress	mitochondrion	68.32	69.92
KRH59820	Soybean	mitochondrion	66.41	68.77
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	65.65	67.98
Bra035840.1-P	Field mustard	mitochondrion	67.56	67.82
CDY66238	Canola	mitochondrion	69.85	66.3
AT5G63510.2	Thale cress	mitochondrion	67.94	63.8
EES00597	Sorghum	mitochondrion	21.37	21.29
EER99796	Sorghum	mitochondrion	20.23	19.41

Protein Annotations

EnsemblPlants:EES06863	EnsemblPlantsGene:SORBI_3004G155100	EntrezGene:8059582	Gene3D:2.160.10.10	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061
PANTHER:PTHR13061:SF22	ProteinID:EES06863	ProteinID:EES06863.1	RefSeq:XP_002453887.1	SEG:seg	SUPFAM:SSF51161
unigene:Sbi.239	UniParc:UPI0001A85B3F	UniProt:C5XSL6	MapMan:2.4.1.4.7	:	:

Description

hypothetical protein

Coordinates

chr4:-:49136959..49141161

Molecular Weight (calculated)

27799.5 Da

IEP (calculated)

8.210

GRAVY (calculated)

0.140

Length

262 amino acids

Sequence
(BLAST)

001: MAAASLARLS RRATASASAA APSLRRLLSA TSTAPAAASA PPPPPSAAAA AAVGADRVRW DYRGQRQLVP LGQWMPKVAV DAYVAPEAVL AGQVTVHDGA
101: SVWSGAVLRG DLNKITLGFC ANVQERCVLH AAWAAPTGLP AETLVDRYVT VGAYCLLRSC TIEPECIIGQ HSILMEGSLV ETNSILEAGS VLPPGRRIPT
201: GELWAGSPAR FVRKLTNEEI MEIPKLATAI NDLMQSHFSE FLPYSNAYLE VEKLKKSFSI PL

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.