Factsheet for Solyc03g019720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039315	Potato	mitochondrion	93.65	93.65
VIT_17s0000g01240.t01	Wine grape	mitochondrion	75.79	77.96
GSMUA_Achr2P06160_001	Banana	mitochondrion	75.79	75.49
Bra038640.1-P	Field mustard	mitochondrion	74.21	74.21
CDY16720	Canola	mitochondrion	73.81	73.81
GSMUA_Achr6P27510_001	Banana	mitochondrion	73.41	73.71
CDY68990	Canola	mitochondrion	73.41	73.41
KRH59820	Soybean	mitochondrion	73.02	72.73
CDY05862	Canola	mitochondrion	73.02	72.73
CDX84424	Canola	mitochondrion	72.62	72.62
AT3G48680.1	Thale cress	mitochondrion	73.41	72.27
Bra018042.1-P	Field mustard	mitochondrion	73.41	72.27
CDY08089	Canola	mitochondrion	73.02	71.88
CDY31369	Canola	mitochondrion	71.43	71.43
Bra029221.1-P	Field mustard	mitochondrion	71.43	71.43
CDY39864	Canola	mitochondrion	71.83	71.26
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	71.43	71.15
Os02t0508000-01	Rice	mitochondrion	72.62	70.93
EES06863	Sorghum	mitochondrion	73.02	70.23
TraesCS6D01G177500.2	Wheat	mitochondrion	70.63	69.53
TraesCS6B01G215700.2	Wheat	mitochondrion	70.63	69.53
Bra035840.1-P	Field mustard	mitochondrion	71.83	69.35
TraesCS6A01G188800.2	Wheat	golgi	70.24	69.14
HORVU6Hr1G044700.2	Barley	mitochondrion	71.03	69.11
CDY66238	Canola	mitochondrion	72.22	65.94
AT5G63510.2	Thale cress	mitochondrion	72.22	65.23
Zm00001d016566_P001	Maize	mitochondrion	71.43	60.81
Solyc02g062600.2.1	Tomato	extracellular, nucleus	23.02	21.64
Solyc04g080570.2.1	Tomato	plastid	21.43	19.78
Solyc02g085040.2.1	Tomato	extracellular	19.84	18.52

Protein Annotations

EnsemblPlants:Solyc03g019720.2.1	EnsemblPlantsGene:Solyc03g019720.2	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061
PANTHER:PTHR13061:SF22	PFAM:PF00132	SUPFAM:SSF51161	UniParc:UPI0002768717	UniProt:K4BEU4	MapMan:2.4.1.4.7

Description

No Description!

Coordinates

chr3:-:61427543..61433968

Molecular Weight (calculated)

27540.2 Da

IEP (calculated)

8.381

GRAVY (calculated)

-0.013

Length

252 amino acids

Sequence
(BLAST)

001: MATLGRLSRR VIASTISGHL RHHQSHNLIR RSLATEAQAA INESPDRVKW DYRGQRRIIP LGQWAPKIAV DAYVAPNVVL AGQVTVCDGA SVWNGAVLRG
101: DLNKITVGFC SSIQEKCVVH AAWSSPTGLP AETVVDRYVT VGAYCLLRSC TIEPECIIGQ HSILMEGSLV ETNSILEAGS VLPPGRRIPS GELWAGNPAR
201: FVRTLTHEEI KEIPKLSTAI NDLANAHHSE FLPYSTVYLE VEKLKKSFGI SI

Best Arabidopsis Sequence Match ( AT3G48680.1 )
(BLAST)

001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI

Arabidopsis Description

GAMMACAL2Gamma carbonic anhydrase-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SMN1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.