Factsheet for Solyc02g085040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009047	Potato	mitochondrion	99.63	99.63
Solyc02g062600.2.1	Tomato	extracellular, nucleus	84.81	85.45
KRH76755	Soybean	mitochondrion	76.3	76.3
KRH28712	Soybean	mitochondrion	75.56	75.56
EES00597	Sorghum	mitochondrion	73.33	75.29
TraesCS7D01G101600.1	Wheat	cytosol	72.96	75.19
TraesCS3D01G199500.1	Wheat	cytosol	72.59	74.81
HORVU7Hr1G022550.1	Barley	cytosol	72.59	74.52
Zm00001d040515_P001	Maize	mitochondrion	72.22	74.43
TraesCS7A01G107200.1	Wheat	cytosol	72.22	74.43
TraesCS3B01G224000.1	Wheat	mitochondrion	72.22	74.43
TraesCS3A01G193500.1	Wheat	cytosol	72.22	74.43
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	9.63	74.29
TraesCS7B01G005800.1	Wheat	cytosol	71.85	74.05
Os01t0283100-01	Rice	mitochondrion	71.85	73.76
Solyc04g080570.2.1	Tomato	plastid	73.7	72.89
Bra012077.1-P	Field mustard	mitochondrion	67.04	71.54
Zm00001d008215_P002	Maize	mitochondrion	72.59	71.27
VIT_04s0023g02060.t01	Wine grape	cytosol	59.63	70.61
TraesCS2B01G169200.1	Wheat	golgi	71.48	70.44
Os12t0169700-01	Rice	mitochondrion	71.11	70.33
HORVU3Hr1G045750.1	Barley	cytosol	45.19	70.11
HORVU3Hr1G045700.1	Barley	cytosol	45.19	70.11
AT5G66510.2	Thale cress	mitochondrion	69.26	69.52
TraesCS2D01G148200.1	Wheat	mitochondrion	70.0	68.98
TraesCS2A01G144200.1	Wheat	mitochondrion	70.0	68.98
EER99796	Sorghum	mitochondrion	69.63	68.86
Zm00001d022324_P001	Maize	mitochondrion	69.26	68.5
Os07t0642900-01	Rice	nucleus	69.26	68.5
HORVU2Hr1G025530.2	Barley	plastid	66.3	58.5
HORVU3Hr1G045680.1	Barley	cytosol, plastid	68.89	57.23
CDY59959	Canola	mitochondrion	14.07	53.52
Solyc03g019720.2.1	Tomato	plastid	18.52	19.84

Protein Annotations

EnsemblPlants:Solyc02g085040.2.1	EnsemblPlantsGene:Solyc02g085040.2	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061
PANTHER:PTHR13061:SF9	PFAM:PF00132	SEG:seg	SUPFAM:SSF51161	UniParc:UPI0002768E51	UniProt:K4BB18
MapMan:2.4.1.4.6	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:48065445..48070736

Molecular Weight (calculated)

29264.0 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.106

Length

270 amino acids

Sequence
(BLAST)

001: MGSAMKAIYT VGFWIRETGQ ALDRLGCRLQ GNYYFQEHLS RHRTLMNLFD KVPVVEKDAF VAPSASIIGD VHIGRSASIW YGCVLRGDVN SVSIGAGTNV
101: QDNSLIHVAK SNISGKVLPT IIGKNVTIGH SAVLHGCTVE DEAFIGMGAT VLDGAVVEKN AMVAAGAHVR QNTRIPFGEV WGGNPARFLR KLTEEEIAFI
201: SESAANYSNL AQVHAAENAK ELDKIEFEKV LRKKLARKDE EYDSMLGVSE TPPELVLPDS SLPDKAPKAS

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.