CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 21766870
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28712	Soybean	mitochondrion	96.67	96.67
PGSC0003DMT400040041	Potato	cytosol, mitochondrion	78.89	79.48
Solyc02g062600.2.1	Tomato	extracellular, nucleus	77.41	77.99
PGSC0003DMT400009047	Potato	mitochondrion	76.3	76.3
Solyc02g085040.2.1	Tomato	extracellular	76.3	76.3
Os01t0283100-01	Rice	mitochondrion	73.33	75.29
KRH61144	Soybean	cytosol	60.74	75.23
KRH61146	Soybean	cytosol	76.67	75.0
EES00597	Sorghum	mitochondrion	72.96	74.9
KRH51833	Soybean	mitochondrion	75.56	74.73
TraesCS3A01G193500.1	Wheat	cytosol	72.22	74.43
TraesCS3D01G199500.1	Wheat	cytosol	71.85	74.05
TraesCS7D01G101600.1	Wheat	cytosol	71.85	74.05
CDY45234	Canola	mitochondrion	69.26	73.91
TraesCS3B01G224000.1	Wheat	mitochondrion	71.48	73.66
TraesCS7A01G107200.1	Wheat	cytosol	71.48	73.66
TraesCS7B01G005800.1	Wheat	cytosol	71.48	73.66
Zm00001d040515_P001	Maize	mitochondrion	71.48	73.66
HORVU7Hr1G022550.1	Barley	cytosol	71.48	73.38
Bra012077.1-P	Field mustard	mitochondrion	68.52	73.12
CDY30772	Canola	mitochondrion	68.89	72.37
AT5G66510.2	Thale cress	mitochondrion	71.11	71.38
Zm00001d008215_P002	Maize	mitochondrion	72.22	70.91
HORVU3Hr1G045750.1	Barley	cytosol	45.56	70.69
HORVU3Hr1G045700.1	Barley	cytosol	45.56	70.69
CDY55089	Canola	mitochondrion	67.04	70.16
CDY50984	Canola	mitochondrion	67.41	70.0
VIT_04s0023g02060.t01	Wine grape	cytosol	58.89	69.74
TraesCS2B01G169200.1	Wheat	golgi	69.63	68.61
EER99796	Sorghum	mitochondrion	69.26	68.5
Os12t0169700-01	Rice	mitochondrion	68.89	68.13
TraesCS2D01G148200.1	Wheat	mitochondrion	68.52	67.52
TraesCS2A01G144200.1	Wheat	mitochondrion	68.52	67.52
Zm00001d022324_P001	Maize	mitochondrion	68.15	67.4
Os07t0642900-01	Rice	nucleus	67.04	66.3
HORVU6Hr1G050700.1	Barley	cytosol, mitochondrion	8.52	65.71
HORVU3Hr1G045680.1	Barley	cytosol, plastid	70.74	58.77
HORVU2Hr1G025530.2	Barley	plastid	64.07	56.54
KRH59820	Soybean	mitochondrion	21.48	22.92
KRH41125	Soybean	endoplasmic reticulum, mitochondrion	21.48	22.92

Protein Annotations

EMBL:ACUP02000639	EnsemblPlants:KRH76755	EnsemblPlantsGene:GLYMA_01G172300	EntrezGene:100794184	Gene3D:2.160.10.10	InterPro:Hexapep
InterPro:Trimer_LpxA-like_sf	PANTHER:PTHR13061	PANTHER:PTHR13061:SF9	PFAM:PF00132	ProteinID:KRH76755	ProteinID:KRH76755.1
SUPFAM:SSF51161	UniParc:UPI0001CA9DAD	UniProt:I1J8S7	MapMan:2.4.1.4.6	:	:

Description

hypothetical protein

Coordinates

chr1:-:50950447..50954591

Molecular Weight (calculated)

29317.0 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.092

Length

270 amino acids

Sequence
(BLAST)

001: MGTLGRVFYA VGFWIRETGQ AIDRLGSRLQ GNYLFQEQLS RHRPLMNLFD KAPSVHRDAF VAPSASLLGD VHVGPASSIW YGCVLRGDVN SITIGSGTNI
101: QDNSLVHVAK SNLSGKVLPT IIGDNVTVGH SAVLQGCTVE DEAFIGMGAT LLDGVYVEKH AMVAAGALVR QNTRIPYGEV WGGNPARFLR KLTEDEMTFF
201: SQSALNYSNL AQAHAAENAK GLDETEFVKV LYKKFARRGE EYHSVLGGVQ ETPAELNVPD NVLLDKVPKA

Best Arabidopsis Sequence Match ( AT1G19580.1 )
(BLAST)

001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN

Arabidopsis Description

GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.