Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040041 | Potato | cytosol, mitochondrion | 98.13 | 98.13 |
| Solyc02g085040.2.1 | Tomato | extracellular | 85.45 | 84.81 |
| EES00597 | Sorghum | mitochondrion | 79.48 | 80.99 |
| Zm00001d040515_P001 | Maize | mitochondrion | 76.87 | 78.63 |
| TraesCS3D01G199500.1 | Wheat | cytosol | 76.87 | 78.63 |
| HORVU7Hr1G022550.1 | Barley | cytosol | 76.49 | 77.95 |
| TraesCS3A01G193500.1 | Wheat | cytosol | 76.12 | 77.86 |
| TraesCS3B01G224000.1 | Wheat | mitochondrion | 76.12 | 77.86 |
| Os01t0283100-01 | Rice | mitochondrion | 76.12 | 77.57 |
| KRH76755 | Soybean | mitochondrion | 77.99 | 77.41 |
| TraesCS7B01G005800.1 | Wheat | cytosol | 75.37 | 77.1 |
| TraesCS7D01G101600.1 | Wheat | cytosol | 75.37 | 77.1 |
| TraesCS7A01G107200.1 | Wheat | cytosol | 75.0 | 76.72 |
| KRH28712 | Soybean | mitochondrion | 77.24 | 76.67 |
| Solyc04g080570.2.1 | Tomato | plastid | 77.24 | 75.82 |
| Zm00001d008215_P002 | Maize | mitochondrion | 77.24 | 75.27 |
| TraesCS2B01G169200.1 | Wheat | golgi | 76.12 | 74.45 |
| Os12t0169700-01 | Rice | mitochondrion | 75.37 | 73.99 |
| TraesCS2A01G144200.1 | Wheat | mitochondrion | 75.37 | 73.72 |
| TraesCS2D01G148200.1 | Wheat | mitochondrion | 75.37 | 73.72 |
| HORVU3Hr1G045750.1 | Barley | cytosol | 47.39 | 72.99 |
| HORVU3Hr1G045700.1 | Barley | cytosol | 47.39 | 72.99 |
| EER99796 | Sorghum | mitochondrion | 74.25 | 72.89 |
| VIT_04s0023g02060.t01 | Wine grape | cytosol | 61.94 | 72.81 |
| Bra012077.1-P | Field mustard | mitochondrion | 68.28 | 72.33 |
| Zm00001d022324_P001 | Maize | mitochondrion | 73.51 | 72.16 |
| HORVU6Hr1G050700.1 | Barley | cytosol, mitochondrion | 9.33 | 71.43 |
| AT5G66510.2 | Thale cress | mitochondrion | 71.64 | 71.38 |
| Os07t0642900-01 | Rice | nucleus | 72.39 | 71.06 |
| HORVU2Hr1G025530.2 | Barley | plastid | 69.4 | 60.78 |
| HORVU3Hr1G045680.1 | Barley | cytosol, plastid | 72.01 | 59.38 |
| CDY59959 | Canola | mitochondrion | 13.81 | 52.11 |
| Solyc03g019720.2.1 | Tomato | plastid | 21.64 | 23.02 |
Protein Annotations
| EnsemblPlants:Solyc02g062600.2.1 | EnsemblPlantsGene:Solyc02g062600.2 | Gene3D:2.160.10.10 | InterPro:Hexapep | InterPro:Trimer_LpxA-like_sf | PANTHER:PTHR13061 |
| PANTHER:PTHR13061:SF9 | PFAM:PF00132 | SUPFAM:SSF51161 | UniParc:UPI000276827F | UniProt:K4B6E8 | MapMan:2.4.1.4.6 |
Description
No Description!
Coordinates
chr2:-:34316871..34324866
Molecular Weight (calculated)
28964.7 Da
IEP (calculated)
7.235
GRAVY (calculated)
-0.056
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTLGKAIYT VGFWIRETGQ AIDRLGCRLQ GNYYFHEQLS RHRTLMNLFN KTPTVDKDAF VAPSASLIGD VHVGRNASIW YGCVLRGDVN SISIGAGSNI
101: QDNSLVHVAK SNLSGKVLPT IIGNNVTVGH SAVLHGCTVE DEAFVGMGAT LLDGAVVEKN AMVAAGALVR QNTRIPCGEV WGGNPARFLR KLTQEEIAFI
201: SESAANYSNL AQVHAGENAK SFDAIEFEKA LRKKFAHKDE EYDSMLGVVR ETPPELVLPV NIQAPKAI
101: QDNSLVHVAK SNLSGKVLPT IIGNNVTVGH SAVLHGCTVE DEAFVGMGAT LLDGAVVEKN AMVAAGALVR QNTRIPCGEV WGGNPARFLR KLTQEEIAFI
201: SESAANYSNL AQVHAGENAK SFDAIEFEKA LRKKFAHKDE EYDSMLGVVR ETPPELVLPV NIQAPKAI
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Arabidopsis Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.