Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G101600.1 | Wheat | cytosol | 97.71 | 97.71 |
| TraesCS3B01G224000.1 | Wheat | mitochondrion | 97.33 | 97.33 |
| TraesCS7A01G107200.1 | Wheat | cytosol | 96.56 | 96.56 |
| HORVU7Hr1G022550.1 | Barley | cytosol | 95.04 | 94.68 |
| HORVU6Hr1G050700.1 | Barley | cytosol, mitochondrion | 11.45 | 85.71 |
| EES00597 | Sorghum | mitochondrion | 85.5 | 85.17 |
| Os01t0283100-01 | Rice | mitochondrion | 85.11 | 84.79 |
| Zm00001d040515_P001 | Maize | mitochondrion | 82.06 | 82.06 |
| Zm00001d008215_P002 | Maize | mitochondrion | 83.59 | 79.64 |
| VIT_18s0001g12730.t01 | Wine grape | cytosol | 79.77 | 76.84 |
| PGSC0003DMT400040041 | Potato | cytosol, mitochondrion | 77.48 | 75.75 |
| AT1G19580.1 | Thale cress | mitochondrion | 79.39 | 75.64 |
| Solyc02g062600.2.1 | Tomato | extracellular, nucleus | 77.1 | 75.37 |
| CDX96658 | Canola | mitochondrion | 77.1 | 75.09 |
| Bra016502.1-P | Field mustard | mitochondrion | 77.1 | 75.09 |
| CDX83758 | Canola | mitochondrion, plastid | 76.72 | 74.72 |
| PGSC0003DMT400009047 | Potato | mitochondrion | 74.05 | 71.85 |
| Solyc02g085040.2.1 | Tomato | extracellular | 74.05 | 71.85 |
| KRH76755 | Soybean | mitochondrion | 73.66 | 71.48 |
| KRH28712 | Soybean | mitochondrion | 73.28 | 71.11 |
| KRH61146 | Soybean | cytosol | 74.43 | 70.65 |
| KRH61144 | Soybean | cytosol | 58.02 | 69.72 |
| KRH51833 | Soybean | mitochondrion | 71.76 | 68.86 |
| CDY45234 | Canola | mitochondrion | 66.41 | 68.77 |
| Bra012077.1-P | Field mustard | mitochondrion | 66.03 | 68.38 |
| CDY30772 | Canola | mitochondrion | 66.03 | 67.32 |
| AT5G66510.2 | Thale cress | mitochondrion | 69.08 | 67.29 |
| Solyc04g080570.2.1 | Tomato | plastid | 69.08 | 66.3 |
| PGSC0003DMT400009474 | Potato | mitochondrion | 68.7 | 65.93 |
| CDY50984 | Canola | mitochondrion | 65.27 | 65.77 |
| CDY55089 | Canola | mitochondrion | 64.5 | 65.5 |
| TraesCS2B01G169200.1 | Wheat | golgi | 67.94 | 64.96 |
| VIT_04s0023g02060.t01 | Wine grape | cytosol | 56.11 | 64.47 |
| CDY29419 | Canola | cytosol | 40.84 | 58.15 |
| Bra025750.1-P | Field mustard | cytosol | 38.93 | 57.3 |
| CDY59959 | Canola | mitochondrion | 12.21 | 45.07 |
| CDY39368 | Canola | mitochondrion | 40.08 | 43.21 |
| TraesCS6B01G215700.2 | Wheat | mitochondrion | 21.37 | 21.88 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G005800.1 | EnsemblPlantsGene:TraesCS7B01G005800 | Gene3D:2.160.10.10 | InterPro:Hexapep | InterPro:Trimer_LpxA-like_sf | PANTHER:PTHR13061 |
| PANTHER:PTHR13061:SF9 | PFAM:PF00132 | SEG:seg | SUPFAM:SSF51161 | TIGR:cd04645 | MapMan:2.4.1.4.6 |
Description
No Description!
Coordinates
chr7B:+:3171084..3174610
Molecular Weight (calculated)
28288.6 Da
IEP (calculated)
6.433
GRAVY (calculated)
-0.156
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKAFYAVGF WIRETGQALD RLGCRLQGNY FFHEQISGHR TLMNIFDKAP HVHKEAFVAP SASLIGDVEV GQGSSIWYGC VLRGDANNVQ VGSGTNIQDN
101: SVVHVAKSNL TGKVFPTIIG DNVTVGHSAV LQGCTVEDEA FVGMGATLLD GVVVEKHGMV AAGALVRQNT RIPCGEVWGG NPAKFLRKLT DEEIAFIAES
201: AANYSNLAKA HAVENAKPLE KIDFEKVLRK KFTHHDEEHD SMLSGTREVP PELAPPSPTP AQ
101: SVVHVAKSNL TGKVFPTIIG DNVTVGHSAV LQGCTVEDEA FVGMGATLLD GVVVEKHGMV AAGALVRQNT RIPCGEVWGG NPAKFLRKLT DEEIAFIAES
201: AANYSNLAKA HAVENAKPLE KIDFEKVLRK KFTHHDEEHD SMLSGTREVP PELAPPSPTP AQ
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Arabidopsis Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.