Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- peroxisome 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014069.1-P | |
| Bra032216.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19580.1 | Bra014069.1-P | AT1G47260.1 | 15821992 |
| AT1G19580.1 | Bra032216.1-P | AT1G47260.1 | 15821992 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29419 | Canola | cytosol | 100.0 | 96.74 |
| HORVU3Hr1G045750.1 | Barley | cytosol | 43.26 | 44.25 |
| HORVU3Hr1G045700.1 | Barley | cytosol | 43.26 | 44.25 |
| Bra016502.1-P | Field mustard | mitochondrion | 64.04 | 42.38 |
| KRH61144 | Soybean | cytosol | 51.12 | 41.74 |
| AT1G19580.1 | Thale cress | mitochondrion | 62.92 | 40.73 |
| TraesCS7D01G101600.1 | Wheat | cytosol | 57.3 | 38.93 |
| TraesCS7B01G005800.1 | Wheat | cytosol | 57.3 | 38.93 |
| TraesCS7A01G107200.1 | Wheat | cytosol | 56.74 | 38.55 |
| TraesCS3B01G224000.1 | Wheat | mitochondrion | 56.74 | 38.55 |
| TraesCS3D01G199500.1 | Wheat | cytosol | 56.18 | 38.17 |
| TraesCS3A01G193500.1 | Wheat | cytosol | 56.18 | 38.17 |
| HORVU7Hr1G022550.1 | Barley | cytosol | 55.62 | 37.64 |
| VIT_18s0001g12730.t01 | Wine grape | cytosol | 56.74 | 37.13 |
| GSMUA_Achr3P09240_001 | Banana | mitochondrion | 26.97 | 36.92 |
| Os01t0283100-01 | Rice | mitochondrion | 53.37 | 36.12 |
| Solyc04g080570.2.1 | Tomato | plastid | 53.93 | 35.16 |
| EES00597 | Sorghum | mitochondrion | 51.69 | 34.98 |
| Bra014069.1-P | Field mustard | mitochondrion | 46.63 | 34.87 |
| KRH61146 | Soybean | cytosol | 53.93 | 34.78 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 25.28 | 34.62 |
| PGSC0003DMT400009474 | Potato | mitochondrion | 52.81 | 34.43 |
| Zm00001d040515_P001 | Maize | mitochondrion | 50.56 | 34.35 |
| Bra032216.1-P | Field mustard | mitochondrion | 52.81 | 34.06 |
| KRH51833 | Soybean | mitochondrion | 51.69 | 33.7 |
| Bra012077.1-P | Field mustard | mitochondrion | 47.19 | 33.2 |
| Zm00001d008215_P002 | Maize | mitochondrion | 50.56 | 32.73 |
| GSMUA_Achr3P09250_001 | Banana | cytosol | 28.09 | 32.68 |
| EER99796 | Sorghum | mitochondrion | 49.44 | 32.23 |
| Zm00001d022324_P001 | Maize | mitochondrion | 49.44 | 32.23 |
| Os12t0169700-01 | Rice | mitochondrion | 48.88 | 31.87 |
| TraesCS2A01G144200.1 | Wheat | mitochondrion | 48.88 | 31.75 |
| TraesCS2B01G169200.1 | Wheat | golgi | 48.88 | 31.75 |
| TraesCS2D01G148200.1 | Wheat | mitochondrion | 48.88 | 31.75 |
| Os07t0642900-01 | Rice | nucleus | 47.75 | 31.14 |
| HORVU3Hr1G045680.1 | Barley | cytosol, plastid | 52.25 | 28.62 |
| HORVU2Hr1G025530.2 | Barley | plastid | 48.88 | 28.43 |
| Bra029221.1-P | Field mustard | mitochondrion | 16.29 | 11.51 |
| Bra038640.1-P | Field mustard | mitochondrion | 15.73 | 11.11 |
| Bra018042.1-P | Field mustard | mitochondrion | 15.73 | 10.94 |
| Bra035840.1-P | Field mustard | mitochondrion | 15.17 | 10.34 |
| HORVU6Hr1G050700.1 | Barley | cytosol, mitochondrion | 1.12 | 5.71 |
Protein Annotations
| EnsemblPlants:Bra025750.1 | EnsemblPlants:Bra025750.1-P | EnsemblPlantsGene:Bra025750 | Gene3D:2.160.10.10 | InterPro:Trimer_LpxA-like_sf | PANTHER:PTHR13061 |
| PANTHER:PTHR13061:SF9 | SUPFAM:SSF51161 | UniParc:UPI000253EE80 | UniProt:M4EAE2 | MapMan:35.1 | : |
Description
AT1G19580 (E=7e-023) GAMMA CA1 | GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase
Coordinates
chrA06:+:7700091..7701728
Molecular Weight (calculated)
19386.5 Da
IEP (calculated)
4.730
GRAVY (calculated)
0.054
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQAAIASEN SALMNVFDKA PILDKEAFVT VILEEDHLHL LLMKRDVNTV SVGSGTNIQD NSLVHVAKSY LIGKVPPTII GDNVIVLCYM DVLLRMRPLS
101: RMGATLLDGV VVEKHDMVAA GACLFDKTLE FLPSGESAEN YPNLAKAHAA ENAKPLNAIE FEKGQKDEEY DAMLSTRA
101: RMGATLLDGV VVEKHDMVAA GACLFDKTLE FLPSGESAEN YPNLAKAHAA ENAKPLNAIE FEKGQKDEEY DAMLSTRA
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
Arabidopsis Description
GAMMACA1GAMMA CA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHZ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.