Factsheet for Bra014069.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000873.1-P
Bra000895.1-P
Bra001351.1-P
Bra002403.1-P
Bra003109.1-P
Bra003171.1-P
Bra003627.1-P
Bra004437.1-P
Bra004680.1-P
Bra005924.1-P
Bra005998.1-P
Bra006117.1-P
Bra006483.1-P
Bra006619.1-P
Bra007047.1-P
Bra008938.1-P
Bra009347.1-P
Bra010452.1-P
Bra011606.1-P
Bra012661.1-P
Bra012716.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra016502.1-P
Bra017426.1-P
Bra018042.1-P
Bra018100.1-P
Bra018237.1-P
Bra018576.1-P
Bra020182.1-P
Bra020934.1-P
Bra021373.1-P
Bra022613.1-P
Bra023341.1-P
Bra023359.1-P
Bra023698.1-P
Bra024437.1-P
Bra024837.1-P
Bra025750.1-P
Bra026619.1-P
Bra029106.1-P
Bra029702.1-P
Bra032017.1-P
Bra032216.1-P
Bra034766.1-P
Bra035083.1-P
Bra036294.1-P
Bra036681.1-P
Bra037836.1-P
Bra037942.1-P
Bra038466.1-P
Bra040051.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47260.1	Bra018576.1-P	AT1G09180.1	21798944
AT1G47260.1	Bra016502.1-P	AT1G19580.1	15821992
AT1G47260.1	Bra025750.1-P	AT1G19580.1	15821992
AT1G47260.1	Bra014069.1-P	AT1G47260.1	15821992
AT1G47260.1	Bra032216.1-P	AT1G47260.1	15821992
AT1G47260.1	Bra014069.1-P	AT1G47260.1	19808034
AT1G47260.1	Bra032216.1-P	AT1G47260.1	19808034
AT1G47260.1	Bra003627.1-P	AT1G79010.1	12837548
AT1G47260.1	Bra035083.1-P	AT1G79010.1	12837548
AT1G47260.1	Bra017426.1-P	AT2G02050.1	12837548
AT1G47260.1	Bra024837.1-P	AT2G02050.1	12837548
AT1G47260.1	Bra026619.1-P	AT2G02050.1	12837548
AT1G47260.1	Bra036681.1-P	AT2G20360.1	12837548
AT1G47260.1	Bra018237.1-P	AT2G31490.1	12837548
AT1G47260.1	Bra004680.1-P	AT2G42310.1	12837548
AT1G47260.1	Bra004437.1-P	AT2G47690.1	12837548
AT1G47260.1	Bra021373.1-P	AT3G03100.1	12837548
AT1G47260.1	Bra032017.1-P	AT3G03100.1	12837548
AT1G47260.1	Bra001351.1-P	AT3G08610.1	12837548
AT1G47260.1	Bra029702.1-P	AT3G08610.1	12837548
AT1G47260.1	Bra040051.1-P	AT3G08610.1	12837548
AT1G47260.1	Bra034766.1-P	AT3G12260.1	12837548
AT1G47260.1	Bra018100.1-P	AT3G47930.1	12837548
AT1G47260.1	Bra018042.1-P	AT3G48680.1	12837548
AT1G47260.1	Bra018042.1-P	AT3G48680.1	15821992
AT1G47260.1	Bra018042.1-P	AT3G48680.1	21798944
AT1G47260.1	Bra003171.1-P	AT3G54120.1	21798944
AT1G47260.1	Bra007047.1-P	AT3G54120.1	21798944
AT1G47260.1	Bra000895.1-P	AT4G02080.1	21798944
AT1G47260.1	Bra036294.1-P	AT4G02080.1	21798944
AT1G47260.1	Bra000873.1-P	AT4G02580.1	12837548
AT1G47260.1	Bra012716.1-P	AT4G16450.1	12837548
AT1G47260.1	Bra038466.1-P	AT4G16450.1	12837548
AT1G47260.1	Bra012661.1-P	AT4G17486.1	21798944
AT1G47260.1	Bra020934.1-P	AT4G20150.1	12837548
AT1G47260.1	Bra010452.1-P	AT4G25660.1	21798944
AT1G47260.1	Bra013908.1-P	AT4G25660.1	21798944
AT1G47260.1	Bra013910.1-P	AT4G25660.1	21798944
AT1G47260.1	Bra010452.1-P	AT4G25680.1	21798944
AT1G47260.1	Bra013908.1-P	AT4G25680.1	21798944
AT1G47260.1	Bra013910.1-P	AT4G25680.1	21798944
AT1G47260.1	Bra011606.1-P	AT4G35320.1	15821992
AT1G47260.1	Bra005924.1-P	AT5G07110.1	21798944
AT1G47260.1	Bra005998.1-P	AT5G08530.1	12837548
AT1G47260.1	Bra009347.1-P	AT5G08530.1	12837548
AT1G47260.1	Bra006117.1-P	AT5G11770.1	12837548
AT1G47260.1	Bra008938.1-P	AT5G11770.1	12837548
AT1G47260.1	Bra023341.1-P	AT5G11770.1	12837548
AT1G47260.1	Bra023359.1-P	AT5G12010.1	21798944
AT1G47260.1	Bra006483.1-P	AT5G18910.1	21798944
AT1G47260.1	Bra023698.1-P	AT5G18910.1	21798944
AT1G47260.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G47260.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G47260.1	Bra020182.1-P	AT5G22290.1	21798944
AT1G47260.1	Bra037942.1-P	AT5G50100.1	21798944
AT1G47260.1	Bra003109.1-P	AT5G52840.1	12837548
AT1G47260.1	Bra022613.1-P	AT5G52840.1	12837548
AT1G47260.1	Bra029106.1-P	AT5G52840.1	12837548
AT1G47260.1	Bra024437.1-P	AT5G67590.1	12837548
AT1G47260.1	Bra037836.1-P	AT5G67590.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47592	Canola	mitochondrion	90.76	78.26
CDY17034	Canola	mitochondrion	90.34	77.9
Bra032216.1-P	Field mustard	mitochondrion	86.97	75.0
AT1G47260.1	Thale cress	mitochondrion	78.99	67.63
Bra016502.1-P	Field mustard	mitochondrion	66.81	59.11
Bra012077.1-P	Field mustard	mitochondrion	52.94	49.8
Bra025750.1-P	Field mustard	cytosol	34.87	46.63
Bra029221.1-P	Field mustard	mitochondrion	16.39	15.48
Bra018042.1-P	Field mustard	mitochondrion	16.39	15.23
Bra038640.1-P	Field mustard	mitochondrion	15.97	15.08
Bra035840.1-P	Field mustard	mitochondrion	16.39	14.94

Protein Annotations

EnsemblPlants:Bra014069.1	EnsemblPlants:Bra014069.1-P	EnsemblPlantsGene:Bra014069	Gene3D:2.160.10.10	InterPro:Hexapep	InterPro:Trimer_LpxA-like_sf
ncoils:Coil	PANTHER:PTHR13061	PANTHER:PTHR13061:SF23	PFAM:PF14602	SUPFAM:SSF51161	UniParc:UPI0002546AEC
UniProt:M4DC56	MapMan:2.4.1.4.6	:	:	:	:

Description

AT1G47260 (E=5e-093) APFI, GAMMA CA2 | GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase

Coordinates

chrA08:+:3845445..3846919

Molecular Weight (calculated)

25848.9 Da

IEP (calculated)

6.305

GRAVY (calculated)

-0.132

Length

238 amino acids

Sequence
(BLAST)

001: MGTLGRVIYT VGNWICGSGQ ALDRIGSRFS VFLMRRCEIA GTHCNFCAGD VNNISVGSGT NIQDNSLVHV AKTNLAGKVL PTTIGDNVTV GHSAVIHGCT
101: VEDEAFVGMG ATLLDGVVVE KHAMVAAGSL VRENTRIPSG EVWGGNPAKF MRKLTDEEIA YISKSAENYI NLAHIHAAEN SKSFEEIEIE RALRKKYARK
201: DEDYDSMLGI VRETPAELIL PDNVLPEKTT TRVPTTHY

Best Arabidopsis Sequence Match ( AT1G47260.1 )
(BLAST)

001: MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNTLVHVAK TNISGKVLPT LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV WGGNPAKFMR KLTDEEIVYI
201: SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF

Arabidopsis Description

GAMMACA2GAMMA CA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WI45]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.