Factsheet for Bra007047.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

plastid 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000739.1-P
Bra005951.1-P
Bra006975.1-P
Bra018954.1-P
Bra027937.1-P
Bra028548.1-P
Bra035242.1-P
Bra038169.1-P
Bra041043.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54120.1	Bra018954.1-P	AT1G52220.1	21798944
AT3G54120.1	Bra027937.1-P	AT1G56330.1	21798944
AT3G54120.1	Bra038169.1-P	AT1G56330.1	21798944
AT3G54120.1	Bra041043.1-P	AT2G20130.1	21798944
AT3G54120.1	Bra006975.1-P	AT3G53180.1	21798944
AT3G54120.1	Bra028548.1-P	AT3G53180.1	21798944
AT3G54120.1	Bra000739.1-P	AT4G11220.1	21798944
AT3G54120.1	Bra035242.1-P	AT4G11220.1	21798944
AT3G54120.1	Bra005951.1-P	AT5G07730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78209	Canola	golgi, plasma membrane, vacuole	100.0	100.0
Bra003171.1-P	Field mustard	plasma membrane	81.95	82.76
AT3G54120.1	Thale cress	cytosol, plasma membrane, vacuole	79.02	79.8
KRH75801	Soybean	plasma membrane	55.61	54.55
KRH66004	Soybean	endoplasmic reticulum, golgi, plasma membrane	54.63	53.59
VIT_08s0007g01720.t01	Wine grape	plasma membrane	53.66	52.63
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	50.73	49.76
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	49.76	48.8
GSMUA_Achr10P...	Banana	plasma membrane	45.85	40.87
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	43.41	36.03
Zm00001d042846_P001	Maize	plasma membrane	36.59	35.71
Os04t0367400-02	Rice	plasma membrane	37.07	35.68
EES03891	Sorghum	golgi, peroxisome, plasma membrane	36.1	34.91
OQU78555	Sorghum	extracellular	36.59	33.94
GSMUA_Achr6P33560_001	Banana	plasma membrane	43.41	33.71
Bra001748.1-P	Field mustard	plastid	31.71	33.16
Os01t0851300-01	Rice	golgi, plasma membrane, vacuole	30.73	31.03
Zm00001d039213_P001	Maize	golgi, plasma membrane, plastid	32.68	28.63
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.17	28.45
Bra034153.1-P	Field mustard	plasma membrane	30.73	28.25
Bra027678.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	33.66	27.49
Bra040612.1-P	Field mustard	plasma membrane	24.39	27.32
Bra004562.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.17	27.09
Bra022426.1-P	Field mustard	cytosol, plasma membrane, plastid	32.2	27.05
Bra037594.1-P	Field mustard	plasma membrane	29.27	26.79
Bra003455.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.17	26.77
Bra027757.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	31.22	25.6
Bra037369.1-P	Field mustard	cytosol	30.24	25.51
Bra004291.1-P	Field mustard	plasma membrane	24.88	24.17
Bra029827.1-P	Field mustard	plasma membrane	27.8	23.85
Bra000739.1-P	Field mustard	cytosol	30.24	23.22
Bra013717.1-P	Field mustard	nucleus	31.22	23.19
Bra019285.1-P	Field mustard	cytosol	30.24	23.13
Bra010539.1-P	Field mustard	cytosol	30.24	23.05
Bra039207.1-P	Field mustard	plasma membrane	18.54	18.27
Bra033951.1-P	Field mustard	plasma membrane	24.39	16.56
Bra035242.1-P	Field mustard	cytosol	15.61	16.0

Protein Annotations

EnsemblPlants:Bra007047.1	EnsemblPlants:Bra007047.1-P	EnsemblPlantsGene:Bra007047	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388
InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF65	PFAM:PF02453	PFscan:PS50845	SEG:seg
TMHMM:TMhelix	UniParc:UPI00025428A0	UniProt:M4CS55	MapMan:13.7.2.1	:	:

Description

AT3G54120 (E=1e-077) | reticulon family protein (RTNLB12)

Coordinates

chrA09:-:27034532..27035428

Molecular Weight (calculated)

23332.0 Da

IEP (calculated)

8.056

GRAVY (calculated)

0.460

Length

205 amino acids

Sequence
(BLAST)

001: MGMGSSLEKL FKRERTVHEI LGGGIVADVM LWRKKNVSVG IVTVTIGSWM VFETFSYTIL TLLSSVLLLL LSIFFLWSKS ASILNRPSPP LTECQVSEEM
101: AEEASKFLRI HVNKLLQVSY DIAMGRDAEL FIRVAVYLFL IAFIGSLMDF QTLCHTGVLV VMAVPAFYER YEDCIDGSIV LIYNKAKELY LRFKIWAYPE
201: HKKLS

Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)

001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS

Arabidopsis Description

RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.